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Commits on Aug 10, 2020

• Update email

  martin-steinegger

  authored
  34275ce

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Commits on Dec 1, 2017

• Fix possible invalid allocation in ffindex_apply_mpi and also fix handling waitpid EINTR return value

  milot-mirdita

  committed
  74550c8

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Commits on Nov 27, 2017

• More error checks

  milot-mirdita

  committed
  f2815bf

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• whitespace

  milot-mirdita

  committed
  e1c56d6

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Commits on Nov 22, 2017

• poll() based applt_mpi, that should not be able to deadlock on large entries anymore

  milot-mirdita

  committed
  e6eb79d

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Commits on Nov 17, 2017

• MPQ worker, sleep between work units with exponential backoff to avoid 100% CPU usage

  milot-mirdita

  committed
  2c75d92

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• poll() based apply_mpi that works even with very large entries

  milot-mirdita

  committed
  d148de0

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Commits on Nov 9, 2017

• Apply MPI has no read buffer anymore, writes directly to ffindex

  milot-mirdita

  committed
  e728be4

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Commits on Jun 27, 2017

• Don’t allocate excessive amounts of memory in ffmerge_splits

  milot-mirdita

  committed
  cceb0ff

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Commits on Jun 26, 2017

• Merge branch 'master' of github.com:soedinglab/ffindex

  milot-mirdita

  committed
  0f93e3f

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• Export the current entry name into the called programs environment

  milot-mirdita

  committed
  ad50bd8

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• Add Dockerfile

  milot-mirdita

  committed
  5ad862e

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Commits on Jun 16, 2017

• Merge branch 'master' of github.com:soedinglab/ffindex

  milot-mirdita

  committed
  4f9fb0e

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• Use time_t instead of int64_t

  milot-mirdita

  committed
  0fd711b

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Commits on Jun 9, 2017

• Revert "twalkmisc for clang at the moment buggy... switched back to default search.h"

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  meiermark

  committed
  43961b5

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Commits on Jun 1, 2017

• twalkmisc for clang at the moment buggy... switched back to default search.h

  meiermark

  committed
  360e417

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Commits on May 10, 2017

• Compile stand alone version for ffindex_apply_mpi.c to ffindex_apply binary. Rename ffindex_apply.c to ffindex_reduce.c

  martin-steinegger

  committed
  0deba3f

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• Change tool name from ffindex_apply to ffindex_reduce

  martin-steinegger

  authored
  d36c225

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Commits on Jan 25, 2017

• Fix invalid end merge for apply_mpi

  milot-mirdita

  committed
  63ca831

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Commits on Jan 24, 2017

• Fix problems with cmake install and MPI

  martin-steinegger

  committed
  5d51ec9

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Commits on Jan 13, 2017

• ffindex merge split with last/first split index

  meiermark

  committed
  9ce7725

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Commits on Oct 17, 2016

• use short ids for ffindex_from_fasta_with_split

  meiermark

  committed
  e140236

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Commits on Oct 15, 2016

• further bugfixes; removed FILE** pointers

  meiermark

  committed
  1480233

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Commits on Oct 14, 2016

• bugfix with filepointer in ffindex_sort

  

  meiermark

  committed
  46cec30

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Commits on Oct 10, 2016

• ffmerge does not use the ffindex_build on the command line any longer

  meiermark

  committed
  4f7184a

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Commits on Oct 7, 2016

• added helper function ff_sort_index to sort a recently written ffindex

  meiermark

  committed
  dbb705a

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Commits on Sep 28, 2016

• added ffindex_from_fasta_with_split; travis support; polished readme

  meiermark

  committed
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Commits on Jul 21, 2016

• adjusted path variables for testing

  meiermark

  committed
  779f1d1

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Commits on Jul 7, 2016

• Simplify MPQ a lot

  milot-mirdita

  committed
  a051cf6

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Commits on May 24, 2016

• Fix edge case where MPQ job could get stuck with only one job

  milot-mirdita

  committed
  99a805e

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Commits on May 21, 2016

• Don’t release workers prematurely

  milot-mirdita

  committed
  97f8206

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• Remove too many workers check, silently handle this case.

  milot-mirdita

  committed
  bb0a9e6

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• Remove MPQ_Main completely, use Worker and Master instead

  milot-mirdita

  committed
  c0c6f18

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Commits on Apr 27, 2016

• Make sure that the split output files are properly flushed and synced before they are merged

  milot-mirdita

  committed
  f84e2a8

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Commits on Apr 23, 2016

• ARG_MAX does not exist on linux, revert to previous behavior

  milot-mirdita

  committed
  d21b826

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