From 3a4c020f9f1927cdd62c34543f48c97db7869df3 Mon Sep 17 00:00:00 2001 From: Felix Wiegand Date: Fri, 18 Oct 2024 10:57:12 +0200 Subject: [PATCH] perf: Update to latest datavzrd wrapper (#125) Just a quick PR to use the latest datavzrd wrapper. ## Summary by CodeRabbit - **New Features** - Upgraded the `datavzrd` utility wrapper to version `v4.7.2`, enhancing the functionality of various reporting rules. - **Bug Fixes** - Resolved issues related to the previous version of the `datavzrd` utility, ensuring smoother report generation for GO enrichment and differential expression. --- workflow/rules/datavzrd.smk | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/workflow/rules/datavzrd.smk b/workflow/rules/datavzrd.smk index 4ac90110..ae23ad45 100644 --- a/workflow/rules/datavzrd.smk +++ b/workflow/rules/datavzrd.smk @@ -74,7 +74,7 @@ rule spia_datavzrd: offer_excel=lookup(within=config, dpath="report/offer_excel", default=False), pathway_db=config["enrichment"]["spia"]["pathway_database"], wrapper: - "v4.6.0/utils/datavzrd" + "v4.7.2/utils/datavzrd" # Generating Differential Expression Datavzrd Report @@ -107,7 +107,7 @@ rule diffexp_datavzrd: wildcards.model ]["primary_variable"], wrapper: - "v4.6.0/utils/datavzrd" + "v4.7.2/utils/datavzrd" # Generating GO Enrichment Datavzrd Report @@ -143,7 +143,7 @@ rule go_enrichment_datavzrd: offer_excel=lookup(within=config, dpath="report/offer_excel", default=False), samples=get_model_samples, wrapper: - "v4.6.0/utils/datavzrd" + "v4.7.2/utils/datavzrd" # Generating Meta Comparison Datavzrd Reports @@ -172,7 +172,7 @@ rule meta_compare_datavzrd: log: "logs/datavzrd-report/meta_comp_{method}.{meta_comp}.log", wrapper: - "v4.6.0/utils/datavzrd" + "v4.7.2/utils/datavzrd" # Generating Input Datavzrd Reports @@ -197,4 +197,4 @@ rule inputs_datavzrd: log: "logs/datavzrd-report/{input}_datavzrd.log", wrapper: - "v4.6.0/utils/datavzrd" + "v4.7.2/utils/datavzrd"