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setup.py
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setup.py
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from distutils.core import setup
from setuptools.command.test import test as TestCommand
import sys
VERSION = "1.72"
DESCRIPTION = """
pita - pita improves transcript annotation
"""
class PyTest(TestCommand):
def finalize_options(self):
TestCommand.finalize_options(self)
self.test_args = []
self.test_suite = True
def run_tests(self):
#import here, cause outside the eggs aren't loaded
import pytest
errno = pytest.main(self.test_args)
sys.exit(errno)
setup (name = 'pita',
version = VERSION,
description = DESCRIPTION,
author='Simon van Heeringen',
author_email='s.vanheeringen@ncmls.ru.nl',
license='MIT',
packages=[
'pita'
],
scripts=[
"scripts/pita",
"scripts/pita_utr",
"scripts/bed12togff3",
"scripts/gff3tobed12",
"scripts/flatbread",
"scripts/breadcrumb",
],
data_files=[],
tests_require=['pytest'],
install_requires=[
"SQLAlchemy",
"gimmemotifs",
"pysam < 0.8",
"pyyaml",
"HTSeq",
"bcbio-gff",
"biopython",
"networkx ==1.9",
"numpy",
],
cmdclass = {'test': PyTest},
)