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testing.yml
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name: Testing
on:
pull_request:
push:
branches: [master]
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
build:
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-latest, macos-latest]
python-version: ["3.9", "3.10", "3.11", "3.12"]
include:
- os: macos-lates
CC: gcc-14
CXX: gcc-14
FC: gfortran-14
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Set gfortran link on macos-latest
if: matrix.os == 'macos-latest'
run: |
ln -s $FC $(dirname $(which $FC))/gfortran
gfortran --version
- name: Install via pip
run: |
python -m pip install --upgrade pip setuptools wheel meson ninja meson-python numpy
python -m pip install --no-build-isolation --editable '.[test]'
- name: Download test data
run: |
wget https://github.com/xzackli/pspy/releases/download/v.test/example_newcov.zip
unzip example_newcov.zip
mv example_newcov pspy/tests/data/
- name: Unit tests
run: |
pytest -vv pspy --cov=pspy --cov-report=xml --cov-report annotate --ignore=pspy/tests/test_pspy_namaster.py
- name: Report Coverage (codecov)
if: matrix.os == 'ubuntu-latest'
uses: codecov/codecov-action@v4
# - name: Test notebooks (Only on Linux for saving time)
# if: matrix.os == 'ubuntu-latest'
# run: |
# python -m pip install '.[notebook]'
# python -m ipykernel install --user --name=pspy
# jupyter nbconvert --to notebook --execute docs/source/notebooks/tutorial_io.ipynb
- name: Comparing pspy to NaMaster
# NaMaster can not be compiled under python 3.12
if: matrix.os == 'ubuntu-latest' && matrix.python == '3.11'
run: |
sudo apt-get install -y libcfitsio-dev libfftw3-dev
python -m unittest pspy/tests/test_pspy_namaster.py