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@sidbdri

SIDB/DRI Bioinformatics (Edinburgh)

Bioinformatics team for the Simons Initiative for the Developing Brain and the Edinburgh Centre of the UK Dementia Research Institute

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  1. LAB-AID LAB-AID Public

    LAB-AID (Laboratory Automated Interrogation of Data): an interactive web application for visualization of multi-level data from biological experiments

    R 1

  2. Sargasso Sargasso Public

    Forked from biomedicalinformaticsgroup/Sargasso

    Sargasso disambiguates mixed-species high-throughput sequencing data.

    Python

Repositories

Showing 10 of 11 repositories
  • cookiecutter-de_analysis_skeleton Public

    Skeleton for new differential expression analysis project.

    sidbdri/cookiecutter-de_analysis_skeleton’s past year of commit activity
    R 3 1 0 2 Updated Oct 15, 2024
  • shiny-rna-seq Public

    Shiny app for examining the results produced by a differential expression analysis project modelled on "cookiecutter-de_analysis_skeleton" repository.

    sidbdri/shiny-rna-seq’s past year of commit activity
    R 0 0 0 0 Updated Sep 25, 2024
  • sidbdri-utils Public

    Download and process genome sequences and annotations from Ensembl.

    sidbdri/sidbdri-utils’s past year of commit activity
    Shell 1 0 3 0 Updated Aug 2, 2024
  • LAB-AID Public

    LAB-AID (Laboratory Automated Interrogation of Data): an interactive web application for visualization of multi-level data from biological experiments

    sidbdri/LAB-AID’s past year of commit activity
    R 1 MIT 0 0 0 Updated Apr 25, 2024
  • empirical_utrs Public

    Calculate empirical 5' UTRs from CAGE data.

    sidbdri/empirical_utrs’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 26, 2022
  • transcript-utils Public

    Simple scripts to perform various tasks for gene transcripts and their sequences.

    sidbdri/transcript-utils’s past year of commit activity
    Python 0 MIT 1 1 0 Updated Apr 28, 2021
  • GREAT Public

    Allows us to run the GREAT enrichment tools as part of our automatic pipeline.

    sidbdri/GREAT’s past year of commit activity
    Shell 0 0 0 0 Updated Apr 26, 2021
  • enrichment_rshiny Public

    Small Shiny app to perform Fisher's exact test for enrichment on gene sets and plot Venn diagrams.

    sidbdri/enrichment_rshiny’s past year of commit activity
    R 0 0 1 0 Updated Apr 2, 2020
  • Sargasso Public Forked from biomedicalinformaticsgroup/Sargasso

    Sargasso disambiguates mixed-species high-throughput sequencing data.

    sidbdri/Sargasso’s past year of commit activity
    Python 0 4 0 0 Updated Aug 20, 2019
  • MultiQC Public Forked from MultiQC/MultiQC

    Aggregate results from bioinformatics analyses across many samples into a single report.

    sidbdri/MultiQC’s past year of commit activity
    Python 0 GPL-3.0 609 0 0 Updated Dec 14, 2017
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