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Commits on Aug 6, 2021

• Updated README after CRAN submission

  shaunpwilkinson

  committed
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• Incremented to 1.4.0.9000 following CRAN submission

  shaunpwilkinson

  committed
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Commits on Aug 5, 2021

• Merge pull request #6 from Rekyt/patch-1

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  shaunpwilkinson

  authored
  5b09006

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• Update to 1.4.0 prior to CRAN release (including removal of closeAllConnections)

  shaunpwilkinson

  committed
  4c5053d

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Commits on Apr 29, 2021

• Fix name of package in CITATION file

  

  Matthias Grenié

  authored
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Commits on Aug 29, 2020

• Included function to get taxids from NCBI

  shaunpwilkinson

  committed
  c3b2fdc

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Commits on Oct 25, 2019

• Fixed bug in demultiplex causing infinite loop (woops)

  shaunpwilkinson

  committed
  e954574

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Commits on Aug 22, 2019

• searchGB now returns empty list for nomatch

  shaunpwilkinson

  committed
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Commits on Jul 31, 2019

• Removed ::: call

  shaunpwilkinson

  committed
  f0696d0

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• Added demultiplex function

  shaunpwilkinson

  committed
  337a2bb

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• Fixed integer mode issue in classify

  shaunpwilkinson

  committed
  af5f780

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Commits on Jun 7, 2019

• Incremented to 1.3.0.9000 following CRAN release

  shaunpwilkinson

  committed
  a209d08

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Commits on May 25, 2019

• Enabled appending in writeFASTA

  shaunpwilkinson

  committed
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Commits on Feb 27, 2019

• Enabled reading of HMMER's .afa files

  shaunpwilkinson

  committed
  33863ea

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Commits on Jan 21, 2019

• Fixed issue with classify not recognizing species names

  shaunpwilkinson

  committed
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Commits on Jan 9, 2019

• Added cross-validation function allocateCVI

  shaunpwilkinson

  committed
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Commits on Dec 22, 2018

• Updates to vignette

  shaunpwilkinson

  committed
  b1d0792

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• Updates to README

  shaunpwilkinson

  committed
  3ada1a9

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• Fixed ping issue causing some exact matches to run through tree

  shaunpwilkinson

  committed
  407af72

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Commits on Dec 19, 2018

• Modified default parameters for learn and classify after benchmarking

  shaunpwilkinson

  committed
  d0e1430

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• Small fix to classify enabling underscores in species names

  shaunpwilkinson

  committed
  84535e7

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• Cleaned up classify code and added species option

  shaunpwilkinson

  committed
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Commits on Dec 1, 2018

• Rebuilt docs after offset parameter added

  shaunpwilkinson

  committed
  3f3f8f6

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• Added 'offset' parameter to classify function

  shaunpwilkinson

  committed
  a8397cb

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Commits on Nov 25, 2018

• Submitted v1.2.0 to CRAN

  shaunpwilkinson

  committed
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• Updates to README and vignette

  shaunpwilkinson

  committed
  b222b9e

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Commits on Nov 24, 2018

• Updates to README after COI classifier v5 added

  shaunpwilkinson

  committed
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Commits on Nov 23, 2018

• Raised switchpoint for multithreading

  shaunpwilkinson

  committed
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Commits on Nov 20, 2018

• Introduced mincount check to classify

  shaunpwilkinson

  committed
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Commits on Nov 19, 2018

• Sped up expand by load balancing allocation of jobs to parSapply

  shaunpwilkinson

  committed
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Commits on Nov 18, 2018

• Prevented sequence re-weighting in fork

  shaunpwilkinson

  committed
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Commits on Nov 17, 2018

• Extended AA filtering to ambiguities

  shaunpwilkinson

  committed
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Commits on Nov 16, 2018

• Reduced switchpoint to 500 to improve hybrid learning speed

  shaunpwilkinson

  committed
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Commits on Nov 12, 2018

• Prevented searchGB from crashing when GB files have non-ASCII chars

  shaunpwilkinson

  committed
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Commits on Nov 11, 2018

• Removed neighbor check

  shaunpwilkinson

  committed
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