.travis.yml

language: python
os: linux
dist: bionic
python:
  - "3.7" # current default Python on Travis CI
install:
  - pip install -e . # install deepreg package with corresponding requirements
  - pip install codecov

jobs:
  include:
    - stage: "Linting and Docs"
      name: "Python Linting"
      script:
        - black --check .
        - flake8 .
    - name: "Sphinx Build"
      script:
       - cd docs
       - make clean html
    - stage: "Tests"
      name: "Unit Tests"
      script:  pytest --cov-report= --cov=deepreg ./test/unit/
      after_success: bash <(curl -s https://codecov.io/bash)
    - name: "Command Tests: Unpaired Unlabeled"
      script:
        - deepreg_train -g "" --config_path deepreg/config/unpaired_labeled_ddf.yaml --log_dir test
        - deepreg_predict -g "" --ckpt_path logs/test/save/weights-epoch2.ckpt --mode test
        - deepreg_warp --image data/test/nifti/unit_test/moving_image.nii.gz --ddf data/test/nifti/unit_test/ddf.nii.gz --out logs/test_warp/out.nii.gz
    - name: "Output Tests: Paired Unlabeled"
      script: travis_wait 30 pytest ./test/output/test_paired_unlabeled.py
    - name: "Output Tests: Paired Labeled"
      script: travis_wait 30 pytest ./test/output/test_paired_labeled.py
    - name: "Output Tests: Unpaired Labeled"
      script: travis_wait 30 pytest ./test/output/test_unpaired_labeled.py
    - name: "Output Tests: Unpaired Unlabeled"
      script: travis_wait 30 pytest ./test/output/test_unpaired_unlabeled.py
    - name: "Output Tests: Grouped Unlabeled"
      script: travis_wait 30 pytest ./test/output/test_grouped_unlabeled.py
    - name: "Output Tests: Grouped Labeled"
      script: travis_wait 30 pytest ./test/output/test_grouped_labeled.py