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Issues list

Add function to convert variant dataset to biallelic core operations Issues related to domain-specific functionality such as LD pruning, PCA, association testing, etc.
#627 opened Jul 8, 2021 by jeromekelleher
2
Consider adding mean imputation function core operations Issues related to domain-specific functionality such as LD pruning, PCA, association testing, etc. good first issue Good for newcomers help wanted Extra attention is needed
#609 opened Jun 15, 2021 by eric-czech
Intermediate variables are not returned if merge=False core operations Issues related to domain-specific functionality such as LD pruning, PCA, association testing, etc.
#405 opened Nov 24, 2020 by tomwhite
2
Test that computed variables are lazy core operations Issues related to domain-specific functionality such as LD pruning, PCA, association testing, etc.
#356 opened Oct 28, 2020 by tomwhite
2
Add count_call_alternate_alleles function core operations Issues related to domain-specific functionality such as LD pruning, PCA, association testing, etc.
#282 opened Sep 25, 2020 by eric-czech
6 tasks
3
Add assert_array_shape calls to method code core operations Issues related to domain-specific functionality such as LD pruning, PCA, association testing, etc. good first issue Good for newcomers
#267 opened Sep 16, 2020 by tomwhite
3
Requirements for population structure analysis core operations Issues related to domain-specific functionality such as LD pruning, PCA, association testing, etc.
#226 opened Sep 1, 2020 by jeromekelleher
3 of 4 tasks
1
Add SE to GWAS linear regression results core operations Issues related to domain-specific functionality such as LD pruning, PCA, association testing, etc.
#220 opened Aug 31, 2020 by eric-czech
Add variant annotation functions core operations Issues related to domain-specific functionality such as LD pruning, PCA, association testing, etc.
#112 opened Aug 13, 2020 by eric-czech
4
Add get_allele_type function core operations Issues related to domain-specific functionality such as LD pruning, PCA, association testing, etc.
#84 opened Aug 3, 2020 by eric-czech
3
Requirements for UKB GWAS core operations Issues related to domain-specific functionality such as LD pruning, PCA, association testing, etc.
#67 opened Jul 24, 2020 by eric-czech
8 of 11 tasks
9
Add invariant validation function core operations Issues related to domain-specific functionality such as LD pruning, PCA, association testing, etc.
#61 opened Jul 23, 2020 by tomwhite
3
Track and improve the performance of allele counting method core operations Issues related to domain-specific functionality such as LD pruning, PCA, association testing, etc. performance
#49 opened Jul 16, 2020 by eric-czech
7
Genotype call array to dosage core operations Issues related to domain-specific functionality such as LD pruning, PCA, association testing, etc. data representation Issues related to how data is represented: data types, data structures, indexes, access methods, etc
#21 opened Jul 8, 2020 by alimanfoo
18
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