Error in rnaseq.rules

[PierreL-B]

Hi Thomas,

I just came across a typo in rnaseq.rules, line 279:
Instead of
"adapter_tool = manager.config.cutadapt.software_choice",
which returns an error for now, it should be:
"adapter_tool = manager.config.trimming.software_choice"

Happy New Year !
Cheers,
Pierre

[cokelaer]

Hi Pierre, happy new year as well !
well spotted. Indeed, this is a typo.
We are now exclusively using fastp for trimming and adapter removal, which explain why we have not seen this issue. I'll try to add a test to catch this regression bug. I'll do a release in a couple of days to fix this issue. I'll let you know once on github and pypi
cheers

[cokelaer]

The new pipelines is now online on pypi (v0.15.0)