Switch to using ruff for Python linting and code formatting

[amontanez24]

Problem Description

• We currently use isort, flake8, and pydocstyle for managing out python linting and code formatting.
• However, many libraries have switched to using ruff. It is a much faster linter/formatter and can replace the isort/flake8/pydocstyle libraries (among others)

Expected behavior

• Use ruff as the standard linter/formatter