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Can't save SCVI model if using custom datamodule

bug

Status: Open.

#3684 In scverse/scvi-tools;

· deto opened on Jan 24, 2026

Integration Testing CI Test Failure on python 3.13

Status: Open.

#3683 In scverse/scvi-tools;

· scverse-bot opened on Jan 22, 2026

Integration Testing CI Test Failure on python 3.12

Status: Open.

#3682 In scverse/scvi-tools;

· scverse-bot opened on Jan 22, 2026

Resolvi.load overflows memory

bug

Status: Open.

#3674 In scverse/scvi-tools;

· jairaj-mathur opened on Jan 15, 2026

Resolvi differential expression takes long time to run

bug

Status: Open.

#3672 In scverse/scvi-tools;

· jairaj-mathur opened on Jan 14, 2026

Incorrect autotune checkpoint frequency

bug

Status: Open.

#3669 In scverse/scvi-tools;

· FrenkT opened on Jan 9, 2026

Allow custom label_key for scib-metrics in scvi.autotune

enhancement

Status: Open.

#3647 In scverse/scvi-tools;

· catheriz opened on Dec 14, 2025

Fail to create reproducible model

bug

Status: Open.

#3611 In scverse/scvi-tools;

· JoseSanchezVillicana opened on Nov 19, 2025

Use scverse template

refactor

Status: Open.

Task

#3600 In scverse/scvi-tools;

· Zethson opened on Nov 14, 2025

Clarify usage of get_normalized_expression(transform_batch= ...) in “Atlas-level integration of lung data” tutorial

Status: Open.

#3578 In scverse/scvi-tools;

· Siyutex opened on Oct 29, 2025

Error when trying to feature native MLX accelerated scvi

enhancement

Status: Open.

#3268 In scverse/scvi-tools;

· c0nleyinnnn opened on Mar 23, 2025

MrVI slowdown due to JAX compilation update

backlog

bug

Status: Open.

#3179 In scverse/scvi-tools;

· justjhong opened on Feb 10, 2025