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faster reading of h5ad file (~18X faster) #3365

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This PR is for faster reading of h5ad file (~18X faster).

Time
Original 74.79
Updated 4.09
Speedup 18.27

Testing was done in AWS m7i.24xlarge

  • Closes #
  • Tests included or not required because:
  • Release notes not necessary because:

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codecov bot commented Nov 14, 2024

Codecov Report

Attention: Patch coverage is 29.41176% with 96 lines in your changes missing coverage. Please review.

Project coverage is 58.87%. Comparing base (5654389) to head (bf77dc1).

Files with missing lines Patch % Lines
src/scanpy/readwrite.py 29.41% 96 Missing ⚠️
Additional details and impacted files
@@             Coverage Diff             @@
##             main    #3365       +/-   ##
===========================================
- Coverage   76.67%   58.87%   -17.80%     
===========================================
  Files         112      112               
  Lines       12946    13079      +133     
===========================================
- Hits         9926     7700     -2226     
- Misses       3020     5379     +2359     
Files with missing lines Coverage Δ
src/scanpy/readwrite.py 65.25% <29.41%> (-11.63%) ⬇️

... and 49 files with indirect coverage changes

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