1.4.6.md

(v1.4.6)=

1.4.6 {small}2020-03-17

Functionality in external

• {func}~scanpy.external.tl.sam self-assembling manifolds {cite:p}Tarashansky2019 {pr}903 {smaller}A Tarashansky
• {func}~scanpy.external.tl.harmony_timeseries for trajectory inference on discrete time points {pr}994 {smaller}A Mousa
• {func}~scanpy.external.tl.wishbone for trajectory inference (bifurcations) {pr}1063 {smaller}A Mousa

Code design

• {mod}~scanpy.pl.violin now reads .uns['colors_...'] {pr}1029 {smaller}michalk8

Bug fixes

• adapt {func}~scanpy.tl.ingest for UMAP 0.4 {pr}1038 {pr}1106 {smaller}S Rybakov
• compat with matplotlib 3.1 and 3.2 {pr}1090 {smaller}I Virshup, P Angerer
• fix PAGA for new igraph {pr}1037 {smaller}P Angerer
• fix rapids compat of louvain {pr}1079 {smaller}LouisFaure