Merge pull request #1 from scientificcomputing/dokken/linting

Add linting as separate dependency

Author: jorgensd

{{cookiecutter.module_name}}/.github/workflows/check_formatting.yml

@@ -32,10 +32,10 @@ jobs:
           python-version: ${{ matrix.python-version }}
 
       - name: Install code
-        run: python -m pip install .[test]
+        run: python -m pip install .[linting]
 
       - name: Flake8 code
-        run: python -m flake8
+        run: python -m flake8 -v
 
       - name: Mypy check
-        run: python -m mypy 
+        run: python -m mypy -v

{{cookiecutter.module_name}}/pyproject.toml

@@ -16,24 +16,34 @@ readme = "README.md"
 
 [project.optional-dependencies]
 test = [
-{%- if cookiecutter.linting|lower == 'y' %}
-    "mypy",
-    "flake8",
-{%- endif %}
 {%- if cookiecutter.testing|lower != 'none' %}
     "pytest",
 {%- endif %}
 {%- if cookiecutter.testing|lower == 'pytest-cov' %}
     "pytest-cov",
 {%- endif %}
 ]
-
+{% if cookiecutter.linting|lower == 'y' -%}
+linting = [
+    "mypy",
+    "flake8",
+]
+{% endif -%}
 {% if cookiecutter.build_docs|lower == 'y' -%}
 docs = [
    "jupyter-book",
    "jupytext",
 ]
 {% endif -%}
+all = [
+   "{{cookiecutter.module_name}}[test]",
+{%- if cookiecutter.linting|lower == 'y' %}
+   "{{cookiecutter.module_name}}[linting]",
+{%- endif %}
+{%- if cookiecutter.build_docs|lower == 'y' %}
+   "{{cookiecutter.module_name}}[docs]"
+{%- endif %}
+]
 
 {% if cookiecutter.testing|lower != 'none' %} 
 [tool.pytest.ini_options]
@@ -50,4 +60,19 @@ addopts = [
 testpaths = [
     "tests"
 ]
-{% endif -%}
+{% endif -%}
+
+{%- if cookiecutter.linting|lower == 'y' %}
+[tool.mypy]
+ignore_missing_imports = true
+# Folders to exclude
+exclude = [
+    "docs/",
+    "build/"
+]
+# Folder to check with mypy
+files = [ 
+    "src",
+    "tests"
+]
+{% endif -%}