.gitignore

# Compiled source #
###################
*.com
*.class
*.dll
*.exe
*.o
*.so
*.Plo
*.Po
*.m4
*.lo
lib/
bin/
.deps
include/
.libs/
*.la

# doxygen #
###################
doc/
html/
*.in

# automake #
###################
autom4te*
config.*
stamp-h1
configure
depcomp
libtool
*.pc
Makefile*
*.sh
install-sh
missing

# Packages #
############
# it's better to unpack these files and commit the raw source
# git has its own built in compression methods
*.7z
*.dmg
*.gz
*.iso
*.jar
*.rar
*.tar
*.zip

# Logs and databases #
######################
*.log
*.sql
*.sqlite

# OS generated files #
######################
.DS_Store
.DS_Store?
._*
.Spotlight-V100
.Trashes
ehthumbs.db
Thumbs.db
.#*

# Misc #
######################
.nfs*
.fuse_*
*.old
.dirstamp
src/*Filter
bowtie2bp
gfr2gff
gfr2bed
gfr2fasta
bp2wig
export2mrf
gfrConfidenceValueTranscript
geneFusions
gfrAddInfo
bp2alignment
sam2bp
gfrConfidenceValues
gfrClassify
gfrCountPairTypes
gfr2bpJunctions
validateBpJunctions
src/test
src/cgi