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Conda install failing

Status: Open.

#88 In sanger-pathogens/Fastaq;

· fgvieira opened on Apr 11, 2025

Tests pass with <code>pytest</code>

Status: Open.

#84 In sanger-pathogens/Fastaq;

· TheChymera opened on Jan 14, 2023

For sequence_trim it is unclear what the format for trim_seqs should be

Status: Open.

#83 In sanger-pathogens/Fastaq;

· idwProxima opened on Mar 22, 2022

Shredded Fastaq sequences generate weird srst2 output for most and antibioitc resistance genotyping

Status: Open.

#82 In sanger-pathogens/Fastaq;

· UzmaBasit opened on Jul 6, 2021

Split input files into batches

Status: Open.

#76 In sanger-pathogens/Fastaq;

· mmokrejs opened on Dec 29, 2018

fastaq: ValueError: empty range for randrange() (191,191, 0)

Status: Open.

#75 In sanger-pathogens/Fastaq;

· mmokrejs opened on Dec 14, 2018

fastq reverse?

Status: Open.

#71 In sanger-pathogens/Fastaq;

· galud27 opened on Mar 19, 2018

Ambiguous nucleotides treated literally by sequence_trim

Status: Open.

#69 In sanger-pathogens/Fastaq;

· ChrisHIV opened on Mar 6, 2018