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README.md

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### Islander Requirements:
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The only requirment of Islander is an output directory containing a single genomic file in fasta format with a '.fa' subscript.
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***
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**-outDir**: Output directory. Default: same directory as GENOME_FASTA_FILE.
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**-tax**: Taxonomic info for query genome. Enter file in outDir containing
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**-virus**: Comma-separated list of entries assigned as viruses.
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**-complete**: Consider genome complete and categorize replicons. Default:
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consider genome incomplete and call all entries contigs.
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consider genome incomplete and call all entries contigs.
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**-force**: Overwrite current output files. Default: leave existing files.
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**-cpu**: Number of cpus to use. Default: $cpu.
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Additional options: **-help**, **-version**, **-verbose**, **-authors**, **-license**
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***
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Example:
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