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Add SAM recommendation of MAPQ=0 for unmapped reads
sam
#753
opened Jan 29, 2024 by
jkbonfield
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Recommend 1bp SEQ with QUAL="*" as quality-unavailable.
sam
#752
opened Jan 29, 2024 by
jkbonfield
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sam-tags:
MM
field value pattern does not allow ambiguity codes
sam
sam-tags
#732
opened Jun 27, 2023 by
zaeleus
sam: Consider recommending using 0 for mapping quality when record is unmapped
sam
#727
opened Jun 8, 2023 by
zaeleus
Allow for UTF-8 field values in header regular expression
sam
#726
opened May 12, 2023 by
jmarshall
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Document the ambiguity of 1-base long seq with QUAL *
sam
#724
opened May 2, 2023 by
jkbonfield
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bam: Explain the use-case of the reference information section
sam
#713
opened Mar 26, 2023 by
zaeleus
Storing definitions for custom tags used in SAM file
sam
sam-tags
#710
opened Mar 22, 2023 by
cmdcolin
SAM: add a sentence on case-insensitivity of RG PL (PR #684)
sam
#684
opened Nov 9, 2022 by
jkbonfield
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Remove "top strand" phrase from MM tag description.
sam
sam-tags
#668
opened Aug 31, 2022 by
jkbonfield
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Clarify MI for identifying source molecule strand
sam
sam-tags
#633
opened Mar 2, 2022 by
nh13
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Expand discussion of how to use a BAI/CSI index to compute query intersections
sam
#539
opened Jan 6, 2021 by
jmarshall
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