From 488bc0d21b421ea0e3550139b669125ef6e67542 Mon Sep 17 00:00:00 2001
From: Sam Horsfield <s.horsfield19@imperial.ac.uk>
Date: Tue, 28 Mar 2023 14:10:11 +0100
Subject: [PATCH] Updates version to 1.3.4

---
 .github/workflows/python-package-conda.yml | 4 ++--
 CMakeLists.txt                             | 2 --
 cmake/FindMKL.cmake                        | 2 +-
 environment_linux.yml                      | 1 +
 environment_macOS.yml                      | 1 +
 ggCaller/__init__.py                       | 2 +-
 6 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/.github/workflows/python-package-conda.yml b/.github/workflows/python-package-conda.yml
index 155c7ec..5a55f41 100644
--- a/.github/workflows/python-package-conda.yml
+++ b/.github/workflows/python-package-conda.yml
@@ -11,7 +11,7 @@ jobs:
     runs-on: ubuntu-20.04
     strategy:
       matrix:
-        python-version: [3.8]
+        python-version: [3.9]
 
     steps:
     - name: checkout source
@@ -46,7 +46,7 @@ jobs:
     runs-on: macos-latest
     strategy:
       matrix:
-        python-version: [3.8]
+        python-version: [3.9]
 
     steps:
     - name: checkout source
diff --git a/CMakeLists.txt b/CMakeLists.txt
index c445a6a..da94cce 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -64,8 +64,6 @@ SET( tbb_LIBRARIES ${tbb_LIBRARY} )
 find_package(MKL)
 #SET(MKL_LIBRARIES)
 #list(APPEND MKL_LIBRARIES ${MKL_LIBRARY})
-MESSAGE(${MKL_LIBRARIES})
-MESSAGE(${MKL_INCLUDE_DIR})
 FIND_PACKAGE_HANDLE_STANDARD_ARGS(MKL DEFAULT_MSG MKL_INCLUDE_DIR MKL_LIBRARIES)
 # avoid local MKL when looking for pytorch
 #SET(MKL_FOUND TRUE)
diff --git a/cmake/FindMKL.cmake b/cmake/FindMKL.cmake
index 4c89b18..ea0c72f 100644
--- a/cmake/FindMKL.cmake
+++ b/cmake/FindMKL.cmake
@@ -49,7 +49,7 @@ set(INTEL_ROOT ${INTEL_ROOT_DEFAULT} CACHE PATH "Folder contains intel libs")
 find_path(MKL_ROOT include/mkl.h PATHS $ENV{MKLROOT} ${INTEL_ROOT}/mkl $ENV{CONDA_PREFIX}
                                    DOC "Folder contains MKL")
 
-MESSAGE(${MKL_ROOT})
+#MESSAGE(${MKL_ROOT})
 
 find_path(MKL_INCLUDE_DIR NAMES mkl.h HINTS ${MKL_ROOT}/include /usr/include/mkl $ENV{CONDA_PREFIX}/include)
 
diff --git a/environment_linux.yml b/environment_linux.yml
index 6f6ba00..76781b7 100644
--- a/environment_linux.yml
+++ b/environment_linux.yml
@@ -4,6 +4,7 @@ channels:
   - bioconda
   - defaults
 dependencies:
+  - python>=3.9
   - pytorch-cpu=1.10
   - mkl-devel
   - tbb-devel
diff --git a/environment_macOS.yml b/environment_macOS.yml
index b66e121..955dc9a 100644
--- a/environment_macOS.yml
+++ b/environment_macOS.yml
@@ -4,6 +4,7 @@ channels:
   - bioconda
   - defaults
 dependencies:
+  - python>=3.9
   - pytorch-cpu=1.10
   - mkl-devel
   - tbb-devel
diff --git a/ggCaller/__init__.py b/ggCaller/__init__.py
index 0ac6919..8e78261 100644
--- a/ggCaller/__init__.py
+++ b/ggCaller/__init__.py
@@ -2,4 +2,4 @@
 
 '''ggCaller: a gene caller for Bifrost graphs'''
 
-__version__ = '1.3.3'
+__version__ = '1.3.4'