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Temporarily fix pysam on 0.7.8 (0.8.0 fails on Python 3)
Before we figure out what causes this, let's have a working test suite by fixing pysam on the latest working release. Traceback: Traceback (most recent call last): File "/home/travis/build/jamescasbon/PyVCF/build/lib.linux-x86_64-3.3/vcf/test/test_vcf.py", line 1109, in testNoVariantsInRange fetched_variants = self.reader.fetch('20', 14370, 17329) File "/home/travis/build/jamescasbon/PyVCF/build/lib.linux-x86_64-3.3/vcf/parser.py", line 623, in fetch self.reader = self._tabix.fetch(chrom, start, end) File "ctabix.pyx", line 345, in pysam.ctabix.Tabixfile.fetch (pysam/ctabix.c:4241) TypeError: expected bytes, str found See jamescasbon#175
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cython
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pysam
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pysam==0.7.8
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setuptools

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