gh-35093: update GAP to 4.12.2

upgrades our corresponding spkgs:

* gap
* gap_packages
* libsemigroups
* Previous upgrades:
   - #31498: GAP 4.11.1
   - #29314: GAP 4.11, libsemigroup 1.0.9
* Upstream: Completely fixed; Fix reported upstream

Closes #34391

URL: #35093
Reported by: Dima Pasechnik
Reviewer(s): Gonzalo Tornaría, Matthias Köppe

Author: Release Manager

build/pkgs/configure/checksums.ini

@@ -1,4 +1,4 @@
 tarball=configure-VERSION.tar.gz
-sha1=d1f5de425016aafef4bf09bd5bc10f41560fdc74
-md5=9394df18d77f67a20e1d365f95ec37ad
-cksum=1365424434
+sha1=81dde9cfffd7aab81def87cdb9df95d68df3a7e0
+md5=6c7050003c660cecb9363b802a8a7f63
+cksum=658724891

build/pkgs/configure/package-version.txt

@@ -1 +1 @@
-6eb2638618742fc9a53343eac964b1827e188325
+c36342c98a8b9a82feb84759676d74d6815a4840

build/pkgs/gap/patches/atlasrep-dont_use_network_by_default.patch

@@ -0,0 +1,11 @@
+--- a/pkg/atlasrep/gap/userpref.g	2022-09-06 17:41:17.000000000 -0300
++++ b/pkg/atlasrep/gap/userpref.g	2022-10-29 07:46:48.580833277 -0300
+@@ -46,7 +46,7 @@
+ this information depends on the value of the preference at the time \
+ when the AtlasRep package and its data extensions get loaded."
+     ],
+-  default:= true,
++  default:= false,
+   values:= [ true, false ],
+   multi:= false,
+   package:= "AtlasRep",