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Commits on Nov 25, 2021

• corrections to input variables and shell command

  a-lud

  committed
  cbced36

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• Removed conda definition from process and shifted to base.config

  a-lud

  committed
  07bacfe

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• spelling error

  a-lud

  committed
  c856377

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• Latest STAR-fusion version

  a-lud

  committed
  c836012

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• Point to arriba specific conda yaml

  a-lud

  committed
  16dba12

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Commits on Nov 18, 2021

• Updated

  a-lud

  committed
  2830fa5

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Commits on Nov 11, 2021

• new changes

  jimmybgammyknee

  committed
  5e36b3f

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Commits on Nov 10, 2021

• different fusioncatcher processes

  jimmybgammyknee

  committed
  aa57567

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Commits on Nov 9, 2021

• changes to modules

  jimmybgammyknee

  committed
  fefbe10

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• fusioncatcher module add

  jimmybgammyknee

  committed
  b1f760b

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Commits on Nov 4, 2021

• More robust file renaming and checksumming

  

  Nathan Watson-Haigh

  committed
  18a6d07

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• Fix for #10

  

  Nathan Watson-Haigh

  committed
  91959b0

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Commits on Oct 27, 2021

• Merge branch 'main' of github.com:sagc-bioinformatics/modules into main

  

  Nathan Watson-Haigh

  committed
  0a94c6a

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• Explicit --barcode-mismatches=1

  

  Nathan Watson-Haigh

  committed
  70c9633

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Commits on Aug 5, 2021

• changes to outdir structure

  jimmybgammyknee

  committed
  33e6117

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• Merge pull request #4 from sagc-bioinformatics/fusions

  Show description for 101b368
  jimmybgammyknee

  authored
  101b368

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• new process

  jimmybgammyknee

  committed
  b28d1db

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• Merge pull request #3 from sagc-bioinformatics/fusions

  Show description for fc96a99
  a-lud

  authored
  fc96a99

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Commits on Jul 30, 2021

• add new fusion processes

  jimmybgammyknee

  committed
  3f16051

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Commits on Jul 5, 2021

• Don't fail if Undetermined file is non-existant

  

  Nathan Watson-Haigh

  committed
  90fed43

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Commits on May 26, 2021

• Add support for single-end, dual index

  

  Nathan Watson-Haigh

  committed
  f2da53e

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• Let bcl2fastq determine base mask from RunInfo.xml

  

  Nathan Watson-Haigh

  committed
  3588f7e

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Commits on May 24, 2021

• Add gitignore

  a-lud

  committed
  6c9b207

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Commits on May 20, 2021

• rclone: correction to number of cpus used

  a-lud

  committed
  44fbe63

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• Rclone: Copy data to SAGC CloudStor repository

  a-lud

  committed
  cb8c38c

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• Merge remote-tracking branch 'origin/main'

  a-lud

  committed
  ef052aa

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Commits on May 19, 2021

• Fix mask and deal with R2/UMI files

  

  Nathan Watson-Haigh

  committed
  2a9a579

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• Fixed typo

  

  Nathan S. Watson-Haigh

  authored
  799cfc0

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Commits on May 12, 2021

• Updated to use project-id in output

  a-lud

  committed
  9cc4de1

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Commits on May 6, 2021

• Corrected output filename for BBduk stats

  a-lud

  committed
  5acfb68

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Commits on Apr 25, 2021

• changes to processes (tested and is ok)

  jimmybgammyknee

  committed
  e761090

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Commits on Apr 21, 2021

• hisat2 module for rnaseq

  jimmybgammyknee

  committed
  6aac1fb

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Commits on Apr 15, 2021

• Updated resource requirements

  a-lud

  committed
  607d19b

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• Updated to use a clean sample sheet (no sample name)

  a-lud

  committed
  12394ac

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Commits on Apr 8, 2021

• Updates

  a-lud

  committed
  b4ad2ee

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