Loading multiple files at once

[markusruhsam]

Is it possible to load multiple STRUCTURE output files for the CLUMPPING together at once? At the moment it looks like that you have to load each output file separately
k6_msat <- loadStructure(k6_file),.... and combine them with k6_all <- structList(k6_msat, k6_run2) which can then be used to Q_list <- lapply(k6_all, getQ). It would be much easier if it was possible to load for example all 10 repeat files of a certain K at once with something like allfiles <- choose.files() and then Q_list <- lapply(allfiles, getQ). Or is that possible already?

[sa-lee]

To load all the files at once you could use lapply on a vector of file names.

k6_all <- lapply(k6_files, loadStructure)
Q_all <- lapply(k6_all, getQ)

I agree that it would be good to add an option to just read the Q-matrix and ignore all other parts of the file though.

[tommydevitt]

When I try to use lapply I get

Error in read_lines_(ds, skip_empty_rows = skip_empty_rows, locale_ = locale, :
Cannot read file /results_f/k1: Invalid argument

Any suggestions?