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Commits on Jun 4, 2026

• README: document heuristicount2 and the soft EM mode

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• Add heuristicount2 regression tests (23 cases)

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• Add heuristicount2: flank-anchored, quality-gated barcode counter

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• Add .gitignore for Python build artifacts

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Commits on Nov 21, 2025

• I added a test file!

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Commits on Dec 20, 2024

• Added assets

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• Add Barcode Target Seeker GUI for user input and script execution

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• Add extensible GUI for Barcoder Suite with welcome page and barcode target seeker integration

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• Refactored barcode handling logic to improve efficiency and added error handling for invalid inputs

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Commits on Dec 16, 2024

• Refactored extract_best_flank function to return Optional[str] and simplified logic for determining the most common flank sequence

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Commits on Aug 28, 2024

• change: do not print undocumented barcodes in standard out

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Commits on Jun 5, 2024

• initialized variables

  

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Commits on Mar 14, 2024

• Refactored GenBankParser.py and removed unused import statements

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• Refactored barcode handling logic and added reverse complement functionality

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• Refactored CRISPRiLibrary and BarCodeLibrary classes

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Commits on Mar 11, 2024

• Merge pull request #7 from ryandward/dependabot/pip/polars-0.20.15

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• Merge pull request #6 from ryandward/dependabot/pip/pyarrow-15.0.1

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• build(deps): bump polars from 0.20.13 to 0.20.15

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• build(deps): bump pyarrow from 15.0.0 to 15.0.1

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• moved PAM logic to its own class

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Commits on Mar 7, 2024

• Add polars library to Pipfile and fix newline issue in PySamParser.py

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• some new ideas for README

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• made all methodsa private with _

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• added docs

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• simplified logic for CRISPRiLibrary

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• simplified logic for CRISPRiLibrary

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• offloaded new class

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• new CRISPRiLibrary class inherits from others

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• redo logic for guide features to keep

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• made a new PAMFinder class

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Commits on Mar 5, 2024

• logic to keep annotations for ambiguous coords

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Commits on Mar 4, 2024

• Refactor design_guides.py: Remove unnecessary code and handle empty DataFrame case

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• Merge pull request #5 from ryandward/dependabot/pip/notebook-7.1.1

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• build(deps-dev): bump notebook from 7.1.0 to 7.1.1

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Commits on Mar 1, 2024

• Refactor target_pam_handler.py

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