Name		Name	Last commit message	Last commit date
parent directory ..
README.md		README.md
common.sh		common.sh
generate_command_list.sh		generate_command_list.sh
generate_cram_paths.sh		generate_cram_paths.sh
run_bin_splitter.sh		run_bin_splitter.sh
run_phase_caller.sh		run_phase_caller.sh
run_phase_caller_batch.sh		run_phase_caller_batch.sh
run_pp_extract.sh		run_pp_extract.sh
run_pp_update.sh		run_pp_update.sh
s2_script.sh		s2_script.sh
s9_script.sh		s9_script.sh
split_bcf.sh		split_bcf.sh
step0_split_bcf.sh		step0_split_bcf.sh
step1_prepare_bcfs.sh		step1_prepare_bcfs.sh
step2_prepare_variants.sh		step2_prepare_variants.sh
step3_pp_extract.sh		step3_pp_extract.sh
step4_merge_regions_bin.sh		step4_merge_regions_bin.sh
step5_split_binary.sh		step5_split_binary.sh
step6a_generate_sample_list.sh		step6a_generate_sample_list.sh
step6b_phase.sh		step6b_phase.sh
step7_merge_binary_files.sh		step7_merge_binary_files.sh
step8_update_bcfs.sh		step8_update_bcfs.sh
step9_concat_final_bcf.sh		step9_concat_final_bcf.sh
upload_docker_image.sh		upload_docker_image.sh

README.md

DNANexus Scripts

This directory contains scripts to launch jobs on DNANexus.

Please follow the documentation here : DNANexus.md