mpileup.cals.9.out

##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##reference=file://grch37.chr20.fa.gz
##contig=<ID=1,length=249250621>
##contig=<ID=16,length=249250621>
##contig=<ID=17,length=249250621>
##contig=<ID=20,length=249250621>
##contig=<ID=21,length=249250621>
##ALT=<ID=*,Description="Represents allele(s) other than observed.">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw read depth">
##INFO=<ID=MQ0F,Number=1,Type=Float,Description="Fraction of MQ0 reads (smaller is better)">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes for each ALT allele, in the same order as listed">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=DP4,Number=4,Type=Integer,Description="Number of high-quality ref-forward , ref-reverse, alt-forward and alt-reverse bases">
##INFO=<ID=MQ,Number=1,Type=Integer,Description="Average mapping quality">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	sample
1	1368833	.	TAAAAAAAAAAAAAAAA	TAAAAAAAAAAAAAA	24.1741	.	DP=2;AC=0;AN=2;DP4=0,1,1,0;MQ=60	GT:PL	0/0:6,0,6
1	1368833	.	T	C	39.5768	.	DP=1;MQ0F=0;AC=0;AN=2;DP4=0,1,0,0;MQ=60	GT:PL	0/0:0,3,13
1	1370000	.	C	CT	.	.	DP=11;MQ0F=0;AC=0;AN=0;DP4=11,0,0,0;MQ=29	GT:PL	./.:0,0,0