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Added Frontiers Article (#211)
* added frontiers * added appveyor * updated test * fixing frontiers_article * GNU make sysreq turned to make only * changed example in frontiers_article to not depend on ggplot2 * fixing appveyor to keep the travis yaml * revert to GNU make for acm_article/skeleton/Makefile * added warnings_are_errors: true * added new version of frontiers template * updated the template to work with the newlines * removed highlight * added changes necessary for PR * needed description parentheses fixed * false trigger * renaming workaround * renaming workaround * Delete appveyor.yml * removed the logo.eps and replaced with pdf * added all the templates for frontiers
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‎.Rbuildignore

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^appveyor\.yml$
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^.*\.Rproj$
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^\.Rproj\.user$
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^\.travis\.yml$

‎DESCRIPTION

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person("Dalton", "Hance", role = c("aut"), email = "dhance@usgs.gov"),
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person("Daniel", "Nüst", role = c("aut", "cph"), email = "daniel.nuest@uni-muenster.de", comment = c(ORCID = "0000-0002-0024-5046")),
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person("Petter", "Uvesten", role = c("aut", "cph"), email = "petter.uvesten.7362@student.lu.se"),
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person("Elio", "Campitelli", role = c("aut", "cph"), email = "elio.campitelli@cima.fcen.uba.ar", comment = c(ORCID = "0000-0002-7742-9230"))
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person("Elio", "Campitelli", role = c("aut", "cph"), email = "elio.campitelli@cima.fcen.uba.ar", comment = c(ORCID = "0000-0002-7742-9230")),
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person("John", "Muschelli", role = c("aut", "cph"), email = "muschellij2@gmail.com", comment = c(ORCID = "0000-0001-6469-1750"))
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)
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Description: A suite of custom R Markdown formats and templates for
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authoring journal articles and conference submissions.

‎NAMESPACE

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export(ctex)
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export(ctex_template)
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export(elsevier_article)
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export(frontiers_article)
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export(ieee_article)
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export(jss_article)
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export(mdpi_article)

‎NEWS

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rticles 0.7
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---------------------------------------------------------------------
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- Added the template for the Frontiers Journals (@muschellij2, @zkamvar, #209).
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- Added the template for the AGU Journals (thanks, @eliocamp, #199).
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- Updated the template for PLOS to version 3.5 (thanks, @uvesten, #196).

‎R/frontiers_article.R

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#' Frontiers open access journal format.
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#'
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#' Format for creating Frontiers journal articles. Adapted from
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#' \href{http://home.frontiersin.org/about/author-guidelines}{http://home.frontiersin.org/about/author-guidelines}.
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#'
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#' @inheritParams rmarkdown::pdf_document
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#' @param ... Additional arguments to \code{rmarkdown::pdf_document}
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#'
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#' @return R Markdown output format to pass to
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#' \code{\link[rmarkdown:render]{render}}
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#'
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#' @export
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frontiers_article <- function(...,
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keep_tex = TRUE) {
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inherit_pdf_document(...,
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template = find_resource("frontiers_article", "template.tex"),
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keep_tex = keep_tex)
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}

‎README.md

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- [The R Journal](https://journal.r-project.org/) articles
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- [Frontiers](https://www.frontiersin.org/) articles
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Under the hood, LaTeX templates are used to ensure that documents conform precisely to submission standards. At the same time, composition and formatting can be done using lightweight [markdown](https://rmarkdown.rstudio.com/authoring_basics.html) syntax, and R code and its output can be seamlessly included using [knitr](https://yihui.name/knitr/).
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Using **rticles** requires the prerequisites described below. You can get most of these automatically by installing the latest release of RStudio (instructions for using **rticles** without RStudio are also provided).

‎inst/rmarkdown/templates/frontiers_article/resources/template.tex

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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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% This is just an example/guide for you to refer to when submitting manuscripts to Frontiers, it is not mandatory to use Frontiers .cls files nor frontiers.tex %
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% This will only generate the Manuscript, the final article will be typeset by Frontiers after acceptance.
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% %
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% %
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% When submitting your files, remember to upload this *tex file, the pdf generated with it, the *bib file (if bibliography is not within the *tex) and all the figures.
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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%%% Version 3.4 Generated 2018/06/15 %%%
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%%% You will need to have the following packages installed: datetime, fmtcount, etoolbox, fcprefix, which are normally inlcuded in WinEdt. %%%
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%%% In http://www.ctan.org/ you can find the packages and how to install them, if necessary. %%%
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%%% NB logo1.jpg is required in the path in order to correctly compile front page header %%%
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\documentclass[utf8]{frontiersSCNS} % for Science, Engineering and Humanities and Social Sciences articles
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%\documentclass[utf8]{frontiersHLTH} % for Health articles
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%\documentclass[utf8]{frontiersFPHY} % for Physics and Applied Mathematics and Statistics articles
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%\setcitestyle{square} % for Physics and Applied Mathematics and Statistics articles
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\usepackage{url,hyperref,lineno,microtype,subcaption}
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\usepackage[onehalfspacing]{setspace}
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\linenumbers
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% BELOW TAKEN FROM rticles plos template
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%
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% amsmath package, useful for mathematical formulas
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\usepackage{amsmath}
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% amssymb package, useful for mathematical symbols
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\usepackage{amssymb}
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% hyperref package, useful for hyperlinks
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\usepackage{hyperref}
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% graphicx package, useful for including eps and pdf graphics
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% include graphics with the command \includegraphics
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\usepackage{graphicx}
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% Sweave(-like)
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\usepackage{fancyvrb}
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\DefineVerbatimEnvironment{Sinput}{Verbatim}{fontshape=sl}
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\DefineVerbatimEnvironment{Soutput}{Verbatim}{}
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\DefineVerbatimEnvironment{Scode}{Verbatim}{fontshape=sl}
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\newenvironment{Schunk}{}{}
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\DefineVerbatimEnvironment{Code}{Verbatim}{}
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\DefineVerbatimEnvironment{CodeInput}{Verbatim}{fontshape=sl}
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\DefineVerbatimEnvironment{CodeOutput}{Verbatim}{}
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\newenvironment{CodeChunk}{}{}
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% cite package, to clean up citations in the main text. Do not remove.
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\usepackage{cite}
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\usepackage{color}
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\providecommand{\tightlist}{%
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\setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}}
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% Below is from frontiers
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%
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\bibliographystyle{frontiersinSCNS}
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% Use doublespacing - comment out for single spacing
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%\usepackage{setspace}
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%\doublespacing
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% Leave a blank line between paragraphs instead of using \\
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\def\keyFont{\fontsize{8}{11}\helveticabold }
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%% ** EDIT HERE **
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%% PLEASE INCLUDE ALL MACROS BELOW
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%% END MACROS SECTION
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$for(header-includes)$
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$header-includes$
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$endfor$
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$if(highlighting-macros)$
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$highlighting-macros$
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$endif$
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\def\Authors{
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$for(author)$
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$author.name$\,\textsuperscript{$author.affiliation$$if(author.email)$*$endif$}$sep$,
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$endfor$
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}
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\def\Address{
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$for(affiliation)$
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\textsuperscript{$affiliation.id$} $if(affiliation.department)$$affiliation.department$, $endif$$if(affiliation.institution)$$affiliation.institution$, $endif$ $if(affiliation.city)$$affiliation.city$, $endif$ $if(affiliation.state)$$affiliation.state$, $endif$ $if(affiliation.country)$$affiliation.country$$endif$
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$endfor$}
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$for(author)$
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$if(author.email)$\def\corrAuthor{$author.name$}\def\corrAddress{$if(author.institution)$$author.institution$\\$endif$$if(author.street)$$author.street$\\$endif$$author.city$, $if(author.state)$$author.state$, $endif$$author.zip$ $if(author.country)$$author.country$$endif$}\def\corrEmail{$author.email$}$endif$
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$if(author.etal)$\def\firstAuthorLast{$author.etal$ {et~al.}}$endif$
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$endfor$
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\begin{document}
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\onecolumn
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\firstpage{1}
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\title[$runtitle$]{$title$}
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\author[\firstAuthorLast]{\Authors}
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\address{} %This field will be automatically populated
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\correspondance{} %This field will be automatically populated
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\extraAuth{}% If there are more than 1 corresponding author, comment this line and uncomment the next one.
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%\extraAuth{corresponding Author2 \\ Laboratory X2, Institute X2, Department X2, Organization X2, Street X2, City X2 , State XX2 (only USA, Canada and Australia), Zip Code2, X2 Country X2, email2@uni2.edu}
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\maketitle
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$body$
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\end{document}

‎inst/rmarkdown/templates/frontiers_article/skeleton/frontiers.csl

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<?xml version="1.0" encoding="utf-8"?>
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<style xmlns="http://purl.org/net/xbiblio/csl" class="in-text" version="1.0" demote-non-dropping-particle="sort-only" default-locale="en-US">
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<info>
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<title>Frontiers journals</title>
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<id>http://www.zotero.org/styles/frontiers</id>
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<link href="http://www.zotero.org/styles/frontiers" rel="self"/>
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<link href="http://www.frontiersin.org/about/AuthorGuidelines" rel="documentation"/>
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<author>
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<name>Sebastian Karcher</name>
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</author>
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<contributor>
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<name>Julian Onions</name>
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<email>julian.onions@gmail.com</email>
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</contributor>
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<category citation-format="author-date"/>
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<category field="generic-base"/>
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<summary>Style for the Open Access Frontiers in ... Journals</summary>
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<updated>2012-09-27T22:06:38+00:00</updated>
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<rights license="http://creativecommons.org/licenses/by-sa/3.0/">This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License</rights>
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</info>
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<macro name="editor">
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<names variable="editor" delimiter=", ">
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<label form="short" prefix=", "/>
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<name and="text" initialize-with=". " delimiter=", " prefix=" "/>
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</names>
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</macro>
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<macro name="author">
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<names variable="author">
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<name name-as-sort-order="all" and="text" sort-separator=", " initialize-with=". " delimiter=", " delimiter-precedes-last="always"/>
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<label form="short" prefix=" "/>
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<substitute>
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<names variable="editor"/>
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<text variable="title"/>
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</substitute>
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</names>
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</macro>
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<macro name="author-short">
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<names variable="author">
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<name form="short" and="text" delimiter=", " initialize-with=". "/>
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<substitute>
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<names variable="editor"/>
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<names variable="translator"/>
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<text variable="title"/>
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</substitute>
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</names>
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</macro>
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<macro name="access">
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<choose>
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<if variable="DOI">
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<text variable="DOI" prefix="doi:"/>
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</if>
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<else-if variable="URL">
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<text value="Available at:" suffix=" "/>
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<text variable="URL"/>
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<group prefix=" [" suffix="]">
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<text term="accessed" text-case="capitalize-first" suffix=" "/>
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<date variable="accessed">
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<date-part name="month" suffix=" "/>
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<date-part name="day" suffix=", "/>
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<date-part name="year"/>
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</date>
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</group>
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</else-if>
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</choose>
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</macro>
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<macro name="title">
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<choose>
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<if type="book">
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<text variable="title" font-style="italic" suffix="."/>
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</if>
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<else-if type="chapter">
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<text variable="title" quotes="true" suffix=","/>
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</else-if>
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<else>
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<text variable="title" suffix="."/>
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</else>
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</choose>
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</macro>
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<macro name="publisher">
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<group delimiter=": ">
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<text variable="publisher-place"/>
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<text variable="publisher"/>
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</group>
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</macro>
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<macro name="year-date">
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<date variable="issued">
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<date-part name="year"/>
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</date>
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</macro>
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<macro name="edition">
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<choose>
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<if is-numeric="edition">
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<group delimiter=" ">
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<number variable="edition" form="ordinal"/>
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<text term="edition" form="short"/>
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</group>
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</if>
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<else>
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<text variable="edition" suffix="."/>
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</else>
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</choose>
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</macro>
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<citation et-al-min="3" et-al-use-first="1" disambiguate-add-year-suffix="true" collapse="year">
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<layout prefix="(" suffix=")" delimiter="; ">
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<group delimiter=", ">
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<text macro="author-short"/>
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<text macro="year-date"/>
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<text variable="locator"/>
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</group>
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</layout>
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</citation>
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<bibliography hanging-indent="true" et-al-min="11" et-al-use-first="10">
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<sort>
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<key macro="author"/>
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<key variable="title"/>
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</sort>
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<layout suffix=".">
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<text macro="author"/>
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<date variable="issued" prefix=" (" suffix=").">
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<date-part name="year"/>
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</date>
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<choose>
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<if type="bill book graphic legal_case legislation motion_picture report song" match="any">
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<group delimiter=" " prefix=" ">
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<text macro="title"/>
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<text macro="edition"/>
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<text macro="editor"/>
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<text macro="publisher"/>
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</group>
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</if>
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<else-if type="chapter paper-conference" match="any">
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<group delimiter=" " prefix=" ">
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<text macro="title"/>
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<text term="in"/>
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<text variable="container-title" font-style="italic"/>
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<text variable="collection-title" suffix="."/>
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</group>
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<text macro="editor"/>
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<group suffix=".">
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<text macro="publisher" prefix=" (" suffix=")"/>
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<group prefix=", ">
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<text variable="page"/>
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</group>
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</group>
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</else-if>
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<else>
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<text macro="title" prefix=" " suffix="."/>
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<group delimiter=", " prefix=" " suffix=".">
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<group delimiter=" ">
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<text variable="container-title" form="short" font-style="italic"/>
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<text variable="volume"/>
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</group>
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<text variable="page"/>
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</group>
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</else>
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</choose>
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<text prefix=" " macro="access"/>
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</layout>
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</bibliography>
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</style>

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