You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi All,
The issue shows below:
Using provided long read assembly instead of running Racon: MMH5in0E.fastq.gz
Traceback (most recent call last):
File "/home//anaconda3/envs/unicycler/bin/unicycler", line 10, in
sys.exit(main())
File "/home//anaconda3/envs/unicycler/lib/python3.10/site-packages/unicycler/unicycler.py", line 118, in main
string_graph = make_miniasm_string_graph(graph, read_dict, long_read_filename,
File "/home//anaconda3/envs/unicycler/lib/python3.10/site-packages/unicycler/miniasm_assembly.py", line 192, in make_miniasm_string_graph
unitig_graph = StringGraph(existing_long_read_assembly)
File "/home//anaconda3/envs/unicycler/lib/python3.10/site-packages/unicycler/string_graph.py", line 47, in init
self.load_from_gfa(filename)
File "/home//anaconda3/envs/unicycler/lib/python3.10/site-packages/unicycler/string_graph.py", line 53, in load_from_gfa
for line in gfa_file:
File "/home/anaconda3/envs/unicycler/lib/python3.10/codecs.py", line 322, in decode
(result, consumed) = self._buffer_decode(data, self.errors, final)
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte
I just dont know what happened during the assembly and don't know how to fix it? Can anyone help me?
The text was updated successfully, but these errors were encountered:
Hi All,
The issue shows below:
Using provided long read assembly instead of running Racon: MMH5in0E.fastq.gz
Traceback (most recent call last):
File "/home//anaconda3/envs/unicycler/bin/unicycler", line 10, in
sys.exit(main())
File "/home//anaconda3/envs/unicycler/lib/python3.10/site-packages/unicycler/unicycler.py", line 118, in main
string_graph = make_miniasm_string_graph(graph, read_dict, long_read_filename,
File "/home//anaconda3/envs/unicycler/lib/python3.10/site-packages/unicycler/miniasm_assembly.py", line 192, in make_miniasm_string_graph
unitig_graph = StringGraph(existing_long_read_assembly)
File "/home//anaconda3/envs/unicycler/lib/python3.10/site-packages/unicycler/string_graph.py", line 47, in init
self.load_from_gfa(filename)
File "/home//anaconda3/envs/unicycler/lib/python3.10/site-packages/unicycler/string_graph.py", line 53, in load_from_gfa
for line in gfa_file:
File "/home/anaconda3/envs/unicycler/lib/python3.10/codecs.py", line 322, in decode
(result, consumed) = self._buffer_decode(data, self.errors, final)
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte
I just dont know what happened during the assembly and don't know how to fix it? Can anyone help me?
The text was updated successfully, but these errors were encountered: