How to ACONITE.txt

How to ACONITE

1) Compile the code. An example of a makefile is provided ('makefile'). example command: 'make -f makefile

2) Modify the aconite_namelist to customize the read.  The following files and inputs are required
	CLIM_FILE='climate_Manaus_1999.csv'  :  This is the daily climate inputs
        PARAM_FILE='parameter_tropical.txt'  :  This is the parameter file
        DAY_OUT=''			     :  Enter a file name here if you want daily outputs
	ANNUAL_OUT='annual out.txt'	     :  Enter a file name here if you want annual outputs.  Stocks will be output on the day of year specified by the 'ANNUAL_STATE_DOY' input below
	RESTART_IN='restart_tropical.txt'    :   Enter the initial conditions file.  If blank it will use the hard coded defaults which aren't guaranteed to work
	RESTART_OUT='restart_test.txt'	     :  Enter a file name if you want the model save an initial condition file for future use
	SITE_IN='site_details_Manaus.txt'    : This is the site level information
	SIM_LENGTH=2000			     : This is the total number of years in the simulation
        CLIM_LENGTH=365			     : This is the total number of days in the climate input file
        PRINT_YEAR_START=1		     : This is the year that output is first saved
        PRINT_YEAR_END=2000		     : This is the year that output is last saved
	ANNUAL_STATE_DOY=200		     : This is the day of year that stocks are saved in the annual output
	COLD_START=0			     : This overwrites the initial stock variables so that C:N are consistent with the parameterized C:N ratios. Rarely used.

3) Run the compiled code.  ('./run_aconite')