History of changes

brainconn 0.0.2 (current)

Change structure from single algorithms submodule to separated submodules: centrality, clustering, core, degree, distance, generative, modularity, motifs, physical_connectivity, reference, and similarity.

brainconn 0.0.1

Rename fork of BCT to brainconn for further independent development

BCT 0.4.1

Refactor code into multiple files
Fix bug in efficiency_bin
Fix bugs in modularity_louvain_und
Fix bugs in participation_coef_b*
Add some test cases

BCT 0.4.0

Add various new functions from Jan 2015 release of BCT
Fix various bugs documented in github issues

BCT 0.3.3

Fix small bug in latmio_und_connected causing failure for sparse matrices
Add non-networkx dependent algorithm to get_components (but less efficient)
Add an implementation of consensus clustering and fix bug in agreement
Fix bug causing clustering_coef_bu to always return 0
Remembered to update changelog
Fix some bugs in modularity_louvain_dir and related
Fix bug in NBS and add optional paired-sample test statistic (sviter)

BCT 0.3.2

Change several functions including threshold_proportional and binarize have copy=True as default argument
Fix bug in threshold_proportional where copying behavior did not work symmetric matrices.
Fix minor quirk in threshold_proportional where np.round rounds to nearest even number (optimizes floating point) which is discrepant with BCT
Add a test suite with some functions
Fix typo in rich_club_bu
Refactor x[range(n),range(n)] to np.fill_diagonal
Fix off-by-one bug in moduality_[prob/fine]tune_und_sign

BCT 0.3.1

Fix bug in NBS
Fix series of bugs in null_models

BCT 0.3

Added NBS
Added in all of the new functions from the Dec 2013 release of BCT
Fixed numerous bugs having to do with indexing errors in modularity
Fixed several odd bugs with clustering_coef, efficiency, distance
For the next release, I clearly need a real test suite.