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Update R packages for Windows version.
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romanhaa committed Jun 17, 2020
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41 changes: 40 additions & 1 deletion source/R-Portable-Win/doc/html/packages.html
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Expand Up @@ -84,8 +84,10 @@ <h1>Package Index <img class="toplogo" src="Rlogo.svg" alt="[R logo]"></h1>
<tr align="left" valign="top" id="lib-boot">
<td width="25%"><a href="../../library/boot/html/00Index.html">boot</a></td><td>Bootstrap Functions (Originally by Angelo Canty for S)</td></tr>
<tr id="pkgs-C"> <td></td>
<tr align="left" valign="top" id="lib-callr">
<td width="25%"><a href="../../library/callr/html/00Index.html">callr</a></td><td>Call R from R</td></tr>
<tr align="left" valign="top" id="lib-cerebroApp">
<td width="25%"><a href="../../library/cerebroApp/html/00Index.html">cerebroApp</a></td><td>Interactive visualization of scRNA-seq data with Cerebro.</td></tr>
<td width="25%"><a href="../../library/cerebroApp/html/00Index.html">cerebroApp</a></td><td>Interactive visualization of scRNA-seq data with Cerebro</td></tr>
<tr align="left" valign="top" id="lib-class">
<td width="25%"><a href="../../library/class/html/00Index.html">class</a></td><td>Functions for Classification</td></tr>
<tr align="left" valign="top" id="lib-cli">
Expand All @@ -99,6 +101,9 @@ <h1>Package Index <img class="toplogo" src="Rlogo.svg" alt="[R logo]"></h1>
<td width="25%"><a href="../../library/codetools/html/00Index.html">codetools</a></td><td>Code Analysis Tools for R</td></tr>
<tr align="left" valign="top" id="lib-colorspace">
<td width="25%"><a href="../../library/colorspace/html/00Index.html">colorspace</a></td><td>A Toolbox for Manipulating and Assessing Colors and Palettes</td></tr>
<tr align="left" valign="top" id="lib-colourpicker">
<td width="25%"><a href="../../library/colourpicker/html/00Index.html">colourpicker</a></td><td>A Colour Picker Tool for Shiny and for Selecting Colours in
Plots</td></tr>
<tr align="left" valign="top" id="lib-compiler">
<td width="25%"><a href="../../library/compiler/html/00Index.html">compiler</a></td><td>The R Compiler Package</td></tr>
<tr align="left" valign="top" id="lib-crayon">
Expand All @@ -114,6 +119,8 @@ <h1>Package Index <img class="toplogo" src="Rlogo.svg" alt="[R logo]"></h1>
<td width="25%"><a href="../../library/datasets/html/00Index.html">datasets</a></td><td>The R Datasets Package</td></tr>
<tr align="left" valign="top" id="lib-DBI">
<td width="25%"><a href="../../library/DBI/html/00Index.html">DBI</a></td><td>R Database Interface</td></tr>
<tr align="left" valign="top" id="lib-desc">
<td width="25%"><a href="../../library/desc/html/00Index.html">desc</a></td><td>Manipulate DESCRIPTION Files</td></tr>
<tr align="left" valign="top" id="lib-digest">
<td width="25%"><a href="../../library/digest/html/00Index.html">digest</a></td><td>Create Compact Hash Digests of R Objects</td></tr>
<tr align="left" valign="top" id="lib-dplyr">
Expand All @@ -129,6 +136,8 @@ <h1>Package Index <img class="toplogo" src="Rlogo.svg" alt="[R logo]"></h1>
<tr id="pkgs-F"> <td></td>
<tr align="left" valign="top" id="lib-fansi">
<td width="25%"><a href="../../library/fansi/html/00Index.html">fansi</a></td><td>ANSI Control Sequence Aware String Functions</td></tr>
<tr align="left" valign="top" id="lib-farver">
<td width="25%"><a href="../../library/farver/html/00Index.html">farver</a></td><td>High Performance Colour Space Manipulation</td></tr>
<tr align="left" valign="top" id="lib-fastmap">
<td width="25%"><a href="../../library/fastmap/html/00Index.html">fastmap</a></td><td>Fast Implementation of a Key-Value Store</td></tr>
<tr align="left" valign="top" id="lib-foreign">
Expand All @@ -143,6 +152,9 @@ <h1>Package Index <img class="toplogo" src="Rlogo.svg" alt="[R logo]"></h1>
<tr id="pkgs-G"> <td></td>
<tr align="left" valign="top" id="lib-geneplotter">
<td width="25%"><a href="../../library/geneplotter/html/00Index.html">geneplotter</a></td><td>Graphics related functions for Bioconductor</td></tr>
<tr align="left" valign="top" id="lib-generics">
<td width="25%"><a href="../../library/generics/html/00Index.html">generics</a></td><td>Common S3 Generics not Provided by Base R Methods Related to
Model Fitting</td></tr>
<tr align="left" valign="top" id="lib-ggplot2">
<td width="25%"><a href="../../library/ggplot2/html/00Index.html">ggplot2</a></td><td>Create Elegant Data Visualisations Using the Grammar of Graphics</td></tr>
<tr align="left" valign="top" id="lib-ggtree">
Expand All @@ -160,6 +172,8 @@ <h1>Package Index <img class="toplogo" src="Rlogo.svg" alt="[R logo]"></h1>
<td width="25%"><a href="../../library/grDevices/html/00Index.html">grDevices</a></td><td>The R Graphics Devices and Support for Colours and Fonts</td></tr>
<tr align="left" valign="top" id="lib-grid">
<td width="25%"><a href="../../library/grid/html/00Index.html">grid</a></td><td>The Grid Graphics Package</td></tr>
<tr align="left" valign="top" id="lib-gridExtra">
<td width="25%"><a href="../../library/gridExtra/html/00Index.html">gridExtra</a></td><td>Miscellaneous Functions for "Grid" Graphics</td></tr>
<tr align="left" valign="top" id="lib-GSEABase">
<td width="25%"><a href="../../library/GSEABase/html/00Index.html">GSEABase</a></td><td>Gene set enrichment data structures and methods</td></tr>
<tr align="left" valign="top" id="lib-GSVA">
Expand All @@ -186,6 +200,9 @@ <h1>Package Index <img class="toplogo" src="Rlogo.svg" alt="[R logo]"></h1>
<td width="25%"><a href="../../library/igraph/html/00Index.html">igraph</a></td><td>Network Analysis and Visualization</td></tr>
<tr align="left" valign="top" id="lib-IRanges">
<td width="25%"><a href="../../library/IRanges/html/00Index.html">IRanges</a></td><td>Infrastructure for manipulating intervals on sequences</td></tr>
<tr align="left" valign="top" id="lib-isoband">
<td width="25%"><a href="../../library/isoband/html/00Index.html">isoband</a></td><td>Generate Isolines and Isobands from Regularly Spaced Elevation
Grids</td></tr>
<tr id="pkgs-J"> <td></td>
<tr align="left" valign="top" id="lib-jsonlite">
<td width="25%"><a href="../../library/jsonlite/html/00Index.html">jsonlite</a></td><td>A Robust, High Performance JSON Parser and Generator for R</td></tr>
Expand Down Expand Up @@ -225,6 +242,8 @@ <h1>Package Index <img class="toplogo" src="Rlogo.svg" alt="[R logo]"></h1>
Estimation</td></tr>
<tr align="left" valign="top" id="lib-mime">
<td width="25%"><a href="../../library/mime/html/00Index.html">mime</a></td><td>Map Filenames to MIME Types</td></tr>
<tr align="left" valign="top" id="lib-miniUI">
<td width="25%"><a href="../../library/miniUI/html/00Index.html">miniUI</a></td><td>Shiny UI Widgets for Small Screens</td></tr>
<tr align="left" valign="top" id="lib-msigdbr">
<td width="25%"><a href="../../library/msigdbr/html/00Index.html">msigdbr</a></td><td>MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format</td></tr>
<tr align="left" valign="top" id="lib-munsell">
Expand All @@ -245,20 +264,30 @@ <h1>Package Index <img class="toplogo" src="Rlogo.svg" alt="[R logo]"></h1>
<td width="25%"><a href="../../library/pbapply/html/00Index.html">pbapply</a></td><td>Adding Progress Bar to '*apply' Functions</td></tr>
<tr align="left" valign="top" id="lib-pillar">
<td width="25%"><a href="../../library/pillar/html/00Index.html">pillar</a></td><td>Coloured Formatting for Columns</td></tr>
<tr align="left" valign="top" id="lib-pkgbuild">
<td width="25%"><a href="../../library/pkgbuild/html/00Index.html">pkgbuild</a></td><td>Find Tools Needed to Build R Packages</td></tr>
<tr align="left" valign="top" id="lib-pkgconfig">
<td width="25%"><a href="../../library/pkgconfig/html/00Index.html">pkgconfig</a></td><td>Private Configuration for 'R' Packages</td></tr>
<tr align="left" valign="top" id="lib-pkgload">
<td width="25%"><a href="../../library/pkgload/html/00Index.html">pkgload</a></td><td>Simulate Package Installation and Attach</td></tr>
<tr align="left" valign="top" id="lib-plogr">
<td width="25%"><a href="../../library/plogr/html/00Index.html">plogr</a></td><td>The 'plog' C++ Logging Library</td></tr>
<tr align="left" valign="top" id="lib-plotly">
<td width="25%"><a href="../../library/plotly/html/00Index.html">plotly</a></td><td>Create Interactive Web Graphics via 'plotly.js'</td></tr>
<tr align="left" valign="top" id="lib-plyr">
<td width="25%"><a href="../../library/plyr/html/00Index.html">plyr</a></td><td>Tools for Splitting, Applying and Combining Data</td></tr>
<tr align="left" valign="top" id="lib-praise">
<td width="25%"><a href="../../library/praise/html/00Index.html">praise</a></td><td>Praise Users</td></tr>
<tr align="left" valign="top" id="lib-prettyunits">
<td width="25%"><a href="../../library/prettyunits/html/00Index.html">prettyunits</a></td><td>Pretty, Human Readable Formatting of Quantities</td></tr>
<tr align="left" valign="top" id="lib-processx">
<td width="25%"><a href="../../library/processx/html/00Index.html">processx</a></td><td>Execute and Control System Processes</td></tr>
<tr align="left" valign="top" id="lib-progress">
<td width="25%"><a href="../../library/progress/html/00Index.html">progress</a></td><td>Terminal Progress Bars</td></tr>
<tr align="left" valign="top" id="lib-promises">
<td width="25%"><a href="../../library/promises/html/00Index.html">promises</a></td><td>Abstractions for Promise-Based Asynchronous Programming</td></tr>
<tr align="left" valign="top" id="lib-ps">
<td width="25%"><a href="../../library/ps/html/00Index.html">ps</a></td><td>List, Query, Manipulate System Processes</td></tr>
<tr align="left" valign="top" id="lib-purrr">
<td width="25%"><a href="../../library/purrr/html/00Index.html">purrr</a></td><td>Functional Programming Tools</td></tr>
<tr id="pkgs-Q"> <td></td>
Expand Down Expand Up @@ -286,8 +315,12 @@ <h1>Package Index <img class="toplogo" src="Rlogo.svg" alt="[R logo]"></h1>
<td width="25%"><a href="../../library/rmarkdown/html/00Index.html">rmarkdown</a></td><td>Dynamic Documents for R</td></tr>
<tr align="left" valign="top" id="lib-rpart">
<td width="25%"><a href="../../library/rpart/html/00Index.html">rpart</a></td><td>Recursive Partitioning and Regression Trees</td></tr>
<tr align="left" valign="top" id="lib-rprojroot">
<td width="25%"><a href="../../library/rprojroot/html/00Index.html">rprojroot</a></td><td>Finding Files in Project Subdirectories</td></tr>
<tr align="left" valign="top" id="lib-RSQLite">
<td width="25%"><a href="../../library/RSQLite/html/00Index.html">RSQLite</a></td><td>'SQLite' Interface for R</td></tr>
<tr align="left" valign="top" id="lib-rstudioapi">
<td width="25%"><a href="../../library/rstudioapi/html/00Index.html">rstudioapi</a></td><td>Safely Access the RStudio API</td></tr>
<tr align="left" valign="top" id="lib-rvcheck">
<td width="25%"><a href="../../library/rvcheck/html/00Index.html">rvcheck</a></td><td>R/Package Version Check</td></tr>
<tr id="pkgs-S"> <td></td>
Expand All @@ -299,6 +332,8 @@ <h1>Package Index <img class="toplogo" src="Rlogo.svg" alt="[R logo]"></h1>
<td width="25%"><a href="../../library/shiny/html/00Index.html">shiny</a></td><td>Web Application Framework for R</td></tr>
<tr align="left" valign="top" id="lib-shinydashboard">
<td width="25%"><a href="../../library/shinydashboard/html/00Index.html">shinydashboard</a></td><td>Create Dashboards with 'Shiny'</td></tr>
<tr align="left" valign="top" id="lib-shinyjs">
<td width="25%"><a href="../../library/shinyjs/html/00Index.html">shinyjs</a></td><td>Easily Improve the User Experience of Your Shiny Apps in Seconds</td></tr>
<tr align="left" valign="top" id="lib-shinythemes">
<td width="25%"><a href="../../library/shinythemes/html/00Index.html">shinythemes</a></td><td>Themes for Shiny</td></tr>
<tr align="left" valign="top" id="lib-shinyWidgets">
Expand All @@ -322,6 +357,8 @@ <h1>Package Index <img class="toplogo" src="Rlogo.svg" alt="[R logo]"></h1>
<tr id="pkgs-T"> <td></td>
<tr align="left" valign="top" id="lib-tcltk">
<td width="25%"><a href="../../library/tcltk/html/00Index.html">tcltk</a></td><td>Tcl/Tk Interface</td></tr>
<tr align="left" valign="top" id="lib-testthat">
<td width="25%"><a href="../../library/testthat/html/00Index.html">testthat</a></td><td>Unit Testing for R</td></tr>
<tr align="left" valign="top" id="lib-tibble">
<td width="25%"><a href="../../library/tibble/html/00Index.html">tibble</a></td><td>Simple Data Frames</td></tr>
<tr align="left" valign="top" id="lib-tidyr">
Expand All @@ -346,6 +383,8 @@ <h1>Package Index <img class="toplogo" src="Rlogo.svg" alt="[R logo]"></h1>
<tr id="pkgs-V"> <td></td>
<tr align="left" valign="top" id="lib-vctrs">
<td width="25%"><a href="../../library/vctrs/html/00Index.html">vctrs</a></td><td>Vector Helpers</td></tr>
<tr align="left" valign="top" id="lib-viridis">
<td width="25%"><a href="../../library/viridis/html/00Index.html">viridis</a></td><td>Default Color Maps from 'matplotlib'</td></tr>
<tr align="left" valign="top" id="lib-viridisLite">
<td width="25%"><a href="../../library/viridisLite/html/00Index.html">viridisLite</a></td><td>Default Color Maps from 'matplotlib' (Lite Version)</td></tr>
<tr id="pkgs-W"> <td></td>
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33 changes: 33 additions & 0 deletions source/R-Portable-Win/library/callr/DESCRIPTION
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Package: callr
Title: Call R from R
Version: 3.4.3
Authors@R: c(
person("Gábor", "Csárdi", role = c("aut", "cre", "cph"),
email = "csardi.gabor@gmail.com",
comment = c(ORCID = "0000-0001-7098-9676")),
person("Winston", "Chang", role = "aut"),
person("RStudio", role = c("cph", "fnd")),
person("Mango Solutions", role = c("cph", "fnd")))
Description: It is sometimes useful to perform a computation in a
separate R process, without affecting the current R process at all.
This packages does exactly that.
License: MIT + file LICENSE
LazyData: true
URL: https://github.com/r-lib/callr#readme
BugReports: https://github.com/r-lib/callr/issues
RoxygenNote: 7.0.2
Imports: processx (>= 3.4.0), R6, utils
Suggests: cliapp, covr, crayon, fansi, pingr, ps, rprojroot, spelling,
testthat, tibble, withr
Encoding: UTF-8
Language: en-US
NeedsCompilation: no
Packaged: 2020-03-26 14:35:17 UTC; gaborcsardi
Author: Gábor Csárdi [aut, cre, cph] (<https://orcid.org/0000-0001-7098-9676>),
Winston Chang [aut],
RStudio [cph, fnd],
Mango Solutions [cph, fnd]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Repository: CRAN
Date/Publication: 2020-03-28 05:50:17 UTC
Built: R 3.5.3; ; 2020-04-22 05:57:33 UTC; windows
30 changes: 30 additions & 0 deletions source/R-Portable-Win/library/callr/INDEX
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callr Call R from R
default_repos Default value for the 'repos' option in callr
subprocesses
r Evaluate an expression in another R session
r_bg Evaluate an expression in another R session, in
the background
r_copycat Run an R process that mimics the current R
process
r_process External R Process
r_process_options Create options for an r_process object
r_session External R Session
r_session_debug Interactive debugging of persistent R sessions
r_session_options Create options for an r_session object
r_vanilla Run an R child process, with no configuration
rcmd Run an R CMD command
rcmd_bg Run an R CMD command in the background
rcmd_copycat Call and R CMD command, while mimicking the
current R session
rcmd_process External R CMD Process
rcmd_process_options Create options for an rcmd_process object
rcmd_safe_env 'rcmd_safe_env' returns a set of environment
variables that are more appropriate for
'rcmd_safe()'. It is exported to allow
manipulating these variables (e.g. add an extra
one), before passing them to the 'rcmd()'
functions.
rscript Run an R script
rscript_process External 'Rscript' process
rscript_process_options
Create options for an rscript_process object
2 changes: 2 additions & 0 deletions source/R-Portable-Win/library/callr/LICENSE
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YEAR: 2016
COPYRIGHT HOLDER: Mango Solutions, RStudio
26 changes: 26 additions & 0 deletions source/R-Portable-Win/library/callr/MD5
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6981888194930153ac54dca89a99e1d0 *DESCRIPTION
71d52f742c496bf5b7b866f37a2deab4 *INDEX
09079911e7389192b5cd3b99be725742 *LICENSE
c7266c009e6f5325f2432e1af2e97543 *Meta/Rd.rds
598e05906c76ceab0d9ec8ecaf8877bc *Meta/features.rds
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cca581dd3e5d3cb3a216dfbe5b1bb738 *Meta/nsInfo.rds
ac92ad09e3745ae452fa36afa9b6e53e *Meta/package.rds
3baef32ac7c4d289985d487f57a94512 *NAMESPACE
378d7386c39fe3ff351ee371c7d85e07 *NEWS.md
ebf0fc819595d631b8bf280c4b049940 *R/callr
ec2cc28877646dbcc0fe761658e9ca28 *R/callr.rdb
08f675046a2eb9694c04bd6a5be00670 *R/callr.rdx
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bce3dcfc9c8ac346c1099a16f4e1fe9d *client.R
f016ae44474fd10d44cef6ccaf294913 *developer-notes.md
5eb898798a402de204bbbd15e8c76059 *doc/assets/extra.css
ddad6d425cef13eeac08473b35e96d7d *doc/assets/rd.js
ed928ff424c5cf154d67dfdd74381e4f *help/AnIndex
134ee1dcb9ac031e32d7b88a0e926c2a *help/aliases.rds
c9f9cde13147d078e257a2a5402a8518 *help/callr.rdb
875b29f18abc8abbdb14ee42899797cb *help/callr.rdx
74a76d1bd1f5791d171f88d66b733f40 *help/paths.rds
690af74709235251911adef9d3dcc531 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
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29 changes: 29 additions & 0 deletions source/R-Portable-Win/library/callr/NAMESPACE
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# Generated by roxygen2: do not edit by hand

S3method(print,callr_error)
export(default_repos)
export(poll)
export(process)
export(r)
export(r_bg)
export(r_copycat)
export(r_process)
export(r_process_options)
export(r_safe)
export(r_session)
export(r_session_options)
export(r_vanilla)
export(rcmd)
export(rcmd_bg)
export(rcmd_copycat)
export(rcmd_process)
export(rcmd_process_options)
export(rcmd_safe)
export(rcmd_safe_env)
export(rscript)
export(rscript_process)
export(rscript_process_options)
export(run)
importFrom(processx,poll)
importFrom(processx,process)
importFrom(processx,run)
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