From 8e9f6b35d2aa812494ffe171931f5f06ef2ea8fb Mon Sep 17 00:00:00 2001
From: Jay Hesselberth <jay.hesselberth@gmail.com>
Date: Fri, 23 Feb 2024 15:16:41 -0700
Subject: [PATCH] renv snapshot

---
 renv.lock | 822 +++++++++++++++++++++++++++++++++++++++---------------
 1 file changed, 593 insertions(+), 229 deletions(-)

diff --git a/renv.lock b/renv.lock
index b4f8474c..8a562f33 100644
--- a/renv.lock
+++ b/renv.lock
@@ -2,26 +2,6 @@
   "R": {
     "Version": "4.3.2",
     "Repositories": [
-      {
-        "Name": "BioCsoft",
-        "URL": "https://bioconductor.org/packages/3.18/bioc"
-      },
-      {
-        "Name": "BioCann",
-        "URL": "https://bioconductor.org/packages/3.18/data/annotation"
-      },
-      {
-        "Name": "BioCexp",
-        "URL": "https://bioconductor.org/packages/3.18/data/experiment"
-      },
-      {
-        "Name": "BioCworkflows",
-        "URL": "https://bioconductor.org/packages/3.18/workflows"
-      },
-      {
-        "Name": "BioCbooks",
-        "URL": "https://bioconductor.org/packages/3.18/books"
-      },
       {
         "Name": "CRAN",
         "URL": "https://cran.rstudio.com"
@@ -35,7 +15,8 @@
     "AnnotationDbi": {
       "Package": "AnnotationDbi",
       "Version": "1.64.1",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "Biobase",
         "BiocGenerics",
@@ -54,7 +35,8 @@
     "AnnotationFilter": {
       "Package": "AnnotationFilter",
       "Version": "1.26.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "GenomicRanges",
         "R",
@@ -67,7 +49,8 @@
     "AnnotationHub": {
       "Package": "AnnotationHub",
       "Version": "3.10.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "AnnotationDbi",
         "BiocFileCache",
@@ -98,8 +81,8 @@
     "BSgenome": {
       "Package": "BSgenome",
       "Version": "1.70.2",
-      "Source": "Bioconductor",
-      "Repository": "Bioconductor 3.18",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "BiocGenerics",
         "BiocIO",
@@ -122,7 +105,8 @@
     "BSgenome.Hsapiens.UCSC.hg19": {
       "Package": "BSgenome.Hsapiens.UCSC.hg19",
       "Version": "1.4.3",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/data/annotation",
       "Requirements": [
         "BSgenome"
       ],
@@ -131,7 +115,8 @@
     "BSgenome.Scerevisiae.UCSC.sacCer3": {
       "Package": "BSgenome.Scerevisiae.UCSC.sacCer3",
       "Version": "1.4.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/data/annotation",
       "Requirements": [
         "BSgenome"
       ],
@@ -140,7 +125,8 @@
     "Biobase": {
       "Package": "Biobase",
       "Version": "2.62.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "BiocGenerics",
         "R",
@@ -152,7 +138,8 @@
     "BiocFileCache": {
       "Package": "BiocFileCache",
       "Version": "2.10.1",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "DBI",
         "R",
@@ -171,7 +158,8 @@
     "BiocGenerics": {
       "Package": "BiocGenerics",
       "Version": "0.48.1",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "R",
         "graphics",
@@ -184,7 +172,8 @@
     "BiocIO": {
       "Package": "BiocIO",
       "Version": "1.12.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "BiocGenerics",
         "R",
@@ -207,8 +196,8 @@
     "BiocNeighbors": {
       "Package": "BiocNeighbors",
       "Version": "1.20.2",
-      "Source": "Bioconductor",
-      "Repository": "Bioconductor 3.18",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "BiocParallel",
         "Matrix",
@@ -223,7 +212,8 @@
     "BiocParallel": {
       "Package": "BiocParallel",
       "Version": "1.36.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "BH",
         "R",
@@ -241,7 +231,8 @@
     "BiocSingular": {
       "Package": "BiocSingular",
       "Version": "1.18.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "BiocGenerics",
         "BiocParallel",
@@ -261,8 +252,8 @@
     "BiocVersion": {
       "Package": "BiocVersion",
       "Version": "3.18.1",
-      "Source": "Bioconductor",
-      "Repository": "Bioconductor 3.18",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "R"
       ],
@@ -271,8 +262,8 @@
     "Biostrings": {
       "Package": "Biostrings",
       "Version": "2.70.2",
-      "Source": "Bioconductor",
-      "Repository": "Bioconductor 3.18",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "BiocGenerics",
         "GenomeInfoDb",
@@ -304,7 +295,8 @@
     "ComplexHeatmap": {
       "Package": "ComplexHeatmap",
       "Version": "2.18.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "GetoptLong",
         "GlobalOptions",
@@ -332,7 +324,7 @@
       "Package": "DBI",
       "Version": "1.2.2",
       "Source": "Repository",
-      "Repository": "https://packagemanager.posit.co/cran/latest",
+      "Repository": "CRAN",
       "Requirements": [
         "R",
         "methods"
@@ -342,7 +334,8 @@
     "DESeq2": {
       "Package": "DESeq2",
       "Version": "1.42.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "Biobase",
         "BiocGenerics",
@@ -365,8 +358,8 @@
     "DOSE": {
       "Package": "DOSE",
       "Version": "3.28.2",
-      "Source": "Bioconductor",
-      "Repository": "Bioconductor 3.18",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "AnnotationDbi",
         "BiocParallel",
@@ -404,7 +397,8 @@
     "DelayedArray": {
       "Package": "DelayedArray",
       "Version": "0.28.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "BiocGenerics",
         "IRanges",
@@ -423,7 +417,8 @@
     "DelayedMatrixStats": {
       "Package": "DelayedMatrixStats",
       "Version": "1.24.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "DelayedArray",
         "IRanges",
@@ -466,7 +461,8 @@
     "DropletUtils": {
       "Package": "DropletUtils",
       "Version": "1.22.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "BH",
         "BiocGenerics",
@@ -497,7 +493,8 @@
     "ExperimentHub": {
       "Package": "ExperimentHub",
       "Version": "2.10.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "AnnotationHub",
         "BiocFileCache",
@@ -559,7 +556,8 @@
     "GO.db": {
       "Package": "GO.db",
       "Version": "3.18.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/data/annotation",
       "Requirements": [
         "AnnotationDbi",
         "R",
@@ -570,8 +568,8 @@
     "GOSemSim": {
       "Package": "GOSemSim",
       "Version": "2.28.1",
-      "Source": "Bioconductor",
-      "Repository": "Bioconductor 3.18",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "AnnotationDbi",
         "GO.db",
@@ -588,7 +586,8 @@
     "GeneOverlap": {
       "Package": "GeneOverlap",
       "Version": "1.38.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "RColorBrewer",
         "gplots",
@@ -600,8 +599,8 @@
     "GenomeInfoDb": {
       "Package": "GenomeInfoDb",
       "Version": "1.38.6",
-      "Source": "Bioconductor",
-      "Repository": "Bioconductor 3.18",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "BiocGenerics",
         "GenomeInfoDbData",
@@ -619,7 +618,8 @@
     "GenomeInfoDbData": {
       "Package": "GenomeInfoDbData",
       "Version": "1.2.11",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/data/annotation",
       "Requirements": [
         "R"
       ],
@@ -628,8 +628,8 @@
     "GenomicAlignments": {
       "Package": "GenomicAlignments",
       "Version": "1.38.2",
-      "Source": "Bioconductor",
-      "Repository": "Bioconductor 3.18",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "BiocGenerics",
         "BiocParallel",
@@ -650,8 +650,8 @@
     "GenomicFeatures": {
       "Package": "GenomicFeatures",
       "Version": "1.54.3",
-      "Source": "Bioconductor",
-      "Repository": "Bioconductor 3.18",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "AnnotationDbi",
         "Biobase",
@@ -679,7 +679,8 @@
     "GenomicRanges": {
       "Package": "GenomicRanges",
       "Version": "1.54.1",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "BiocGenerics",
         "GenomeInfoDb",
@@ -723,8 +724,8 @@
     "Gviz": {
       "Package": "Gviz",
       "Version": "1.46.1",
-      "Source": "Bioconductor",
-      "Repository": "Bioconductor 3.18",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "AnnotationDbi",
         "BSgenome",
@@ -761,8 +762,8 @@
     "HDF5Array": {
       "Package": "HDF5Array",
       "Version": "1.30.1",
-      "Source": "Bioconductor",
-      "Repository": "Bioconductor 3.18",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "BiocGenerics",
         "DelayedArray",
@@ -784,7 +785,8 @@
     "HDO.db": {
       "Package": "HDO.db",
       "Version": "0.99.1",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/data/annotation",
       "Requirements": [
         "AnnotationDbi",
         "R",
@@ -823,7 +825,8 @@
     "IRanges": {
       "Package": "IRanges",
       "Version": "2.36.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "BiocGenerics",
         "R",
@@ -838,7 +841,8 @@
     "KEGGREST": {
       "Package": "KEGGREST",
       "Version": "1.42.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "Biostrings",
         "R",
@@ -848,6 +852,17 @@
       ],
       "Hash": "8d6e9f4dce69aec9c588c27ae79be08e"
     },
+    "KernSmooth": {
+      "Package": "KernSmooth",
+      "Version": "2.23-22",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R",
+        "stats"
+      ],
+      "Hash": "2fecebc3047322fa5930f74fae5de70f"
+    },
     "MASS": {
       "Package": "MASS",
       "Version": "7.3-60",
@@ -883,7 +898,8 @@
     "MatrixGenerics": {
       "Package": "MatrixGenerics",
       "Version": "1.14.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "matrixStats",
         "methods"
@@ -906,7 +922,8 @@
     "ProtGenerics": {
       "Package": "ProtGenerics",
       "Version": "1.34.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "methods"
       ],
@@ -955,7 +972,7 @@
       "Package": "R6",
       "Version": "2.5.1",
       "Source": "Repository",
-      "Repository": "https://packagemanager.posit.co/cran/latest",
+      "Repository": "CRAN",
       "Requirements": [
         "R"
       ],
@@ -972,7 +989,7 @@
       "Package": "RColorBrewer",
       "Version": "1.1-3",
       "Source": "Repository",
-      "Repository": "https://packagemanager.posit.co/cran/latest",
+      "Repository": "CRAN",
       "Requirements": [
         "R"
       ],
@@ -1133,8 +1150,8 @@
     "Rhdf5lib": {
       "Package": "Rhdf5lib",
       "Version": "1.24.2",
-      "Source": "Bioconductor",
-      "Repository": "Bioconductor 3.18",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "R"
       ],
@@ -1143,8 +1160,8 @@
     "Rhtslib": {
       "Package": "Rhtslib",
       "Version": "2.4.1",
-      "Source": "Bioconductor",
-      "Repository": "Bioconductor 3.18",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "zlibbioc"
       ],
@@ -1153,7 +1170,8 @@
     "Rsamtools": {
       "Package": "Rsamtools",
       "Version": "2.18.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "BiocGenerics",
         "BiocParallel",
@@ -1187,7 +1205,8 @@
     "S4Arrays": {
       "Package": "S4Arrays",
       "Version": "1.2.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "BiocGenerics",
         "IRanges",
@@ -1204,8 +1223,8 @@
     "S4Vectors": {
       "Package": "S4Vectors",
       "Version": "0.40.2",
-      "Source": "Bioconductor",
-      "Repository": "Bioconductor 3.18",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "BiocGenerics",
         "R",
@@ -1219,7 +1238,8 @@
     "ScaledMatrix": {
       "Package": "ScaledMatrix",
       "Version": "1.10.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "DelayedArray",
         "Matrix",
@@ -1325,7 +1345,8 @@
     "SingleCellExperiment": {
       "Package": "SingleCellExperiment",
       "Version": "1.24.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "BiocGenerics",
         "DelayedArray",
@@ -1341,8 +1362,8 @@
     "SparseArray": {
       "Package": "SparseArray",
       "Version": "1.2.4",
-      "Source": "Bioconductor",
-      "Repository": "Bioconductor 3.18",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "BiocGenerics",
         "IRanges",
@@ -1375,7 +1396,8 @@
     "SummarizedExperiment": {
       "Package": "SummarizedExperiment",
       "Version": "1.32.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "Biobase",
         "BiocGenerics",
@@ -1398,7 +1420,8 @@
     "TxDb.Hsapiens.UCSC.hg19.knownGene": {
       "Package": "TxDb.Hsapiens.UCSC.hg19.knownGene",
       "Version": "3.2.2",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/data/annotation",
       "Requirements": [
         "AnnotationDbi",
         "GenomicFeatures"
@@ -1408,7 +1431,8 @@
     "TxDb.Scerevisiae.UCSC.sacCer3.sgdGene": {
       "Package": "TxDb.Scerevisiae.UCSC.sacCer3.sgdGene",
       "Version": "3.2.2",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/data/annotation",
       "Requirements": [
         "AnnotationDbi",
         "GenomicFeatures"
@@ -1431,8 +1455,8 @@
     "VariantAnnotation": {
       "Package": "VariantAnnotation",
       "Version": "1.48.1",
-      "Source": "Bioconductor",
-      "Repository": "Bioconductor 3.18",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "AnnotationDbi",
         "BSgenome",
@@ -1473,7 +1497,8 @@
     "XVector": {
       "Package": "XVector",
       "Version": "0.42.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "BiocGenerics",
         "IRanges",
@@ -1501,7 +1526,8 @@
     "alevinQC": {
       "Package": "alevinQC",
       "Version": "1.18.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "DT",
         "GGally",
@@ -1526,7 +1552,8 @@
     "annotatr": {
       "Package": "annotatr",
       "Version": "1.28.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "AnnotationDbi",
         "AnnotationHub",
@@ -1588,7 +1615,7 @@
       "Package": "askpass",
       "Version": "1.2.0",
       "Source": "Repository",
-      "Repository": "https://packagemanager.posit.co/cran/latest",
+      "Repository": "CRAN",
       "Requirements": [
         "sys"
       ],
@@ -1621,7 +1648,7 @@
       "Package": "backports",
       "Version": "1.4.1",
       "Source": "Repository",
-      "Repository": "https://packagemanager.posit.co/cran/latest",
+      "Repository": "CRAN",
       "Requirements": [
         "R"
       ],
@@ -1631,7 +1658,7 @@
       "Package": "base64enc",
       "Version": "0.1-3",
       "Source": "Repository",
-      "Repository": "https://packagemanager.posit.co/cran/latest",
+      "Repository": "CRAN",
       "Requirements": [
         "R"
       ],
@@ -1640,8 +1667,8 @@
     "beachmat": {
       "Package": "beachmat",
       "Version": "2.18.1",
-      "Source": "Bioconductor",
-      "Repository": "Bioconductor 3.18",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "BiocGenerics",
         "DelayedArray",
@@ -1678,8 +1705,8 @@
     "biomaRt": {
       "Package": "biomaRt",
       "Version": "2.58.2",
-      "Source": "Bioconductor",
-      "Repository": "Bioconductor 3.18",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "AnnotationDbi",
         "BiocFileCache",
@@ -1698,7 +1725,8 @@
     "biovizBase": {
       "Package": "biovizBase",
       "Version": "1.50.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Requirements": [
         "AnnotationDbi",
         "AnnotationFilter",
@@ -1730,7 +1758,7 @@
       "Package": "bit",
       "Version": "4.0.5",
       "Source": "Repository",
-      "Repository": "https://packagemanager.posit.co/cran/latest",
+      "Repository": "CRAN",
       "Requirements": [
         "R"
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@@ -1740,7 +1768,7 @@
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@@ -5553,7 +5886,7 @@
       "Package": "viridisLite",
       "Version": "0.4.2",
       "Source": "Repository",
-      "Repository": "https://packagemanager.posit.co/cran/latest",
+      "Repository": "CRAN",
       "Requirements": [
         "R"
       ],
@@ -5581,7 +5914,7 @@
       "Package": "vroom",
       "Version": "1.6.5",
       "Source": "Repository",
-      "Repository": "https://packagemanager.posit.co/cran/latest",
+      "Repository": "CRAN",
       "Requirements": [
         "R",
         "bit64",
@@ -5603,11 +5936,29 @@
       ],
       "Hash": "390f9315bc0025be03012054103d227c"
     },
+    "waldo": {
+      "Package": "waldo",
+      "Version": "0.5.2",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R",
+        "cli",
+        "diffobj",
+        "fansi",
+        "glue",
+        "methods",
+        "rematch2",
+        "rlang",
+        "tibble"
+      ],
+      "Hash": "c7d3fd6d29ab077cbac8f0e2751449e6"
+    },
     "withr": {
       "Package": "withr",
       "Version": "3.0.0",
       "Source": "Repository",
-      "Repository": "https://packagemanager.posit.co/cran/latest",
+      "Repository": "CRAN",
       "Requirements": [
         "R",
         "grDevices",
@@ -5619,7 +5970,7 @@
       "Package": "xfun",
       "Version": "0.42",
       "Source": "Repository",
-      "Repository": "https://packagemanager.posit.co/cran/latest",
+      "Repository": "CRAN",
       "Requirements": [
         "grDevices",
         "stats",
@@ -5631,7 +5982,7 @@
       "Package": "xml2",
       "Version": "1.3.6",
       "Source": "Repository",
-      "Repository": "https://packagemanager.posit.co/cran/latest",
+      "Repository": "CRAN",
       "Requirements": [
         "R",
         "cli",
@@ -5640,11 +5991,23 @@
       ],
       "Hash": "1d0336142f4cd25d8d23cd3ba7a8fb61"
     },
+    "xtable": {
+      "Package": "xtable",
+      "Version": "1.8-4",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R",
+        "stats",
+        "utils"
+      ],
+      "Hash": "b8acdf8af494d9ec19ccb2481a9b11c2"
+    },
     "yaml": {
       "Package": "yaml",
       "Version": "2.3.8",
       "Source": "Repository",
-      "Repository": "https://packagemanager.posit.co/cran/latest",
+      "Repository": "CRAN",
       "Hash": "29240487a071f535f5e5d5a323b7afbd"
     },
     "yulab.utils": {
@@ -5667,7 +6030,8 @@
     "zlibbioc": {
       "Package": "zlibbioc",
       "Version": "1.48.0",
-      "Source": "Bioconductor",
+      "Source": "Repository",
+      "Repository": "https://bioconductor.org/packages/3.18/bioc",
       "Hash": "50ad6f7b0baaaccf1a387d2f1ecce911"
     },
     "zoo": {