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1. MINT MINT Public

   Modular, integrated, Next-gen Transcriptomics Pipeline (A reproducible, config-driven R pipeline for TCGA transcriptomic and differential expression analysis )

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2. rnaseq-alignment-pipeline rnaseq-alignment-pipeline Public

   An automated, end-to-end RNA-Seq preprocessing and quantification pipeline utilizing HISAT2 for genomic alignment and featureCounts for gene expression matrix generation. It is optimized for VMware.

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