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Rosella run questions #28
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Ah yes sorry, my bad. The bin command got changed to recover. So just take your current command and replace bin with recover |
Hello Rhys, thanks for the clarification!. Now I run Rosella and got this:
|
Did you run this line from the install instructions: |
Oh i see, I have problems installing flight. I have pip 8.1.2 and cannot upgrade it. is there a conda way to install flight? or a way in which I can avoid pip? thanks for your fast answer |
If you installed |
Same error as reported earlier and unable to install flight as well |
Hey there, So what error do you get when you try to install flight? What version of python are you running, and are you in installing into a conda or virtual environment? Cheers, |
I'm also interested in if this was resolved as I have been having similar issues. I'll be back if I figure it out. |
Could you update this in the READ ME file? I had the same error and had to hunt for the solution. It might save you some hassle if you start getting this question over and over lol |
Should be fixed |
Hello I'm trying to run rosella on a HPC server, I installed the program via conda
conda install -c bioconda rosella
once installed I ran
rosella bin
as mentioned on documentation but the program is not accepting the 'bin' command:rosella bin -r final.contigs.fa --coverage-values depth.txt -o rosella_bins -t 32
I got this error message:
I'm using the depth.txt file built from metabat2
jgi_summarize_bam_contig_depths
program as the coverage file.The text was updated successfully, but these errors were encountered: