Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Feature request: specify binners to exclude in Recover #22

Closed
StevenJRobbins opened this issue May 24, 2022 · 1 comment
Closed

Feature request: specify binners to exclude in Recover #22

StevenJRobbins opened this issue May 24, 2022 · 1 comment

Comments

@StevenJRobbins
Copy link

Feature request: It would be nice to be able to specify which binners to include/exclude from the Aviary recover workflow. For me, Maxbin seems to get stuck on some of my data and takes several days to run. Spread over many samples, that's a lot of time. I think it will finish eventually but since I doubt it will add critical improvement to the final MAGs by itself, it'd be nice to be able to exclude it to save time. I can imagine others may have cases where they'd want to do this, if not just to do a quicker run for testing, so may be worth implementing.

Thanks!

Edit: This issue was already raised and discussed. Resolution was that the ability to specify/exclude binners is on the cards but not yet implemented.

@rhysnewell
Copy link
Owner

I think you were meant to open this as a feature request on the aviary github, closing this now

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants