setup.py

from os import path
from setuptools import setup, find_packages



VERSION = '0.0.2'

DESCRIPTION = 'Python package for segmentation of axons and morphological analysis.'

CLASSIFIERS = [
    'Natural Language :: English',
    'Programming Language :: Python :: 3',
    'Programming Language :: Python',
]

REQUIREMENTS = ['codecov==2.1.11', 
                'pytest==6.2.2', 
                'albumentations==0.5.2', 
                'attrs==20.3.0', 
                'certifi==2020.12.5', 
                'chardet==4.0.0', 
                'codecov==2.1.11', 
                'coverage==5.5', 
                'cycler==0.10.0', 
                'decorator==4.4.2', 
                'efficientnet-pytorch==0.6.3', 
                'idna==2.10', 
                'imageio==2.9.0', 
                'imgaug==0.4.0', 
                'imglyb==1.0.0', 
                'iniconfig==1.1.1', 
                'jgo==1.0.0', 
                'joblib==1.0.1', 
                'JPype1==1.2.1', 
                'kiwisolver==1.3.1', 
                'matplotlib==3.3.4', 
                'munch==2.5.0', 
                'nd2reader==3.2.3', 
                'networkx==2.5', 
                'olefile==0.46', 
                'opencv-python==4.5.1.48', 
                'opencv-python-headless==4.5.1.48', 
                'packaging==20.9', 
                'pandas==1.2.3', 
                'patsy==0.5.1', 
                'Pillow>=6.2.0', 
                'PIMS==0.5', 
                'pluggy==0.13.1', 
                'pretrainedmodels==0.7.4', 
                'psutil==5.8.0', 
                'py==1.10.0', 
                'pyimagej==1.0.0', 
                'pyparsing==2.4.7', 
                'pytest==6.2.2', 
                'python-dateutil==2.8.1', 
                'pytz==2021.1', 
                'PyWavelets==1.1.1', 
                'PyYAML', 
                'requests==2.25.1', 
                'scikit-image==0.18.1', 
                'scikit-learn==0.24.1', 
                'scipy==1.6.1', 
                'scyjava==1.1.0', 
                'seaborn==0.11.1', 
                'segmentation-models-pytorch==0.1.3', 
                'Shapely==1.7.1',
                'sklearn==0.0', 
                'slicerator==1.0.0', 
                'statsmodels==0.12.2', 
                'threadpoolctl==2.1.0', 
                'tifffile==2021.2.26', 
                'timm==0.3.2', 
                'toml==0.10.2', 
                'torchaudio==0.8.0', 
                'torchvision==0.9.0', 
                'tqdm==4.59.0', 
                'urllib3==1.26.3', 
                'xarray==0.17.0', 
                'xmltodict==0.12.0',
]



PACKAGES = [
    'autoballs',
    'autoballs.network',
]


SETUP_REQUIRES = ('pytest','pytest-cov', 'pytest-runner', 'codecov')
TESTS_REQUIRES = ('pytest','pytest-cov','codecov')

this_directory = path.abspath(path.dirname(__file__))
with open(path.join(this_directory, 'README.md'), encoding='utf-8') as f:
    long_description = f.read()

options = {
    'name': 'autoballs',
    'version': VERSION,
    'author': 'Ryan Greenhalgh',
    'author_email': 'ryan.greenhalgh@hotmail.co.uk, ',
    'description': DESCRIPTION,
    'classifiers': CLASSIFIERS,
    'packages': PACKAGES,
    'long_description':long_description,
    'long_description_content_type':'text/markdown',
    'install_requires': REQUIREMENTS,
    'setup_requires': SETUP_REQUIRES,
    'test_requires': TESTS_REQUIRES
}


setup(**options)