AR2 model for influenza

To run locally without Docker

To test this out locally, run the following with flu_ar2 as your working directory.

python -m venv .venv
source .venv/bin/activate
python -m pip install -r requirements.txt

python main.py --today_date=2024-01-06

This should result in a model output file and a pdf with a plot under flu_ar2/output/.

requirements.txt and renv.lock details

requirements.txt and renv.lock were generated according to README.md. For renv.lock, we installed these specific libraries:

Rscript -e "renv::install(c('lubridate', 'readr', 'remotes'))"
Rscript -e "renv::install('arrow')"
Rscript -e "renv::install('reichlab/zoltr')"
Rscript -e "renv::install('hubverse-org/hubData@*release')"
Rscript -e "renv::install('hubverse-org/hubVis@*release')"