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id url species
bed.gz https://s3.amazonaws.com/igv.broadinstitute.org/annotations/hg19/genes/refGene.hg19.bed.gz Homo sapiens
bed.gz.tbi https://s3.amazonaws.com/igv.broadinstitute.org/annotations/hg19/genes/refGene.hg19.bed.gz.tbi Homo sapiens
bam https://data.broadinstitute.org/igvdata/BodyMap/hg19/IlluminaHiSeq2000_BodySites/brain_merged/accepted_hits.bam Homo sapiens
vcf.gz https://s3.amazonaws.com/1000genomes/release/20130502/ALL.wgs.phase3_shapeit2_mvncall_integrated_v5b.20130502.sites.vcf.gz Homo sapiens
vcf.gz.tbi https://s3.amazonaws.com/1000genomes/release/20130502/ALL.wgs.phase3_shapeit2_mvncall_integrated_v5b.20130502.sites.vcf.gz.tbi Homo sapiens
seg.gz https://data.broadinstitute.org/igvdata/test/igv-web/segmented_data_080520.seg.gz Homo sapiens
bigwig https://s3.amazonaws.com/igv.broadinstitute.org/data/hg19/encode/wgEncodeBroadHistoneGm12878H3k4me3StdSig.bigWig Homo sapiens
txt http://s3.amazonaws.com/igv.broadinstitute.org/annotations/ca21/ca21_refFlat.txt Homo sapiens
in the django_docker_engine demo, and try to run lineup, I get this error in the docker logs:
INFO:root:Reading from envar
Traceback (most recent call last):
File "../csv2js.py", line 67, in <module>
print(tab.make_outside_data_js())
File "/var/tabular.py", line 199, in make_outside_data_js
column_defs = self._make_column_defs()
File "/var/tabular.py", line 239, in _make_column_defs
values = get_typed_column(col, self.rows)
File "/var/tabular.py", line 51, in get_typed_column
return [typed(s) for s in get_raw_column(column, list_of_dicts)]
File "/var/tabular.py", line 51, in <listcomp>
return [typed(s) for s in get_raw_column(column, list_of_dicts)]
File "/var/tabular.py", line 76, in typed
assert type(s) == str
AssertionError
This in turn means that outside_data.js is empty, and (because we don't have robust error handling) the screen is just empty.
The text was updated successfully, but these errors were encountered:
When I upload this:
in the django_docker_engine demo, and try to run lineup, I get this error in the docker logs:
This in turn means that outside_data.js is empty, and (because we don't have robust error handling) the screen is just empty.
The text was updated successfully, but these errors were encountered: