Upgrade dependencies with CVSS scores of 8.0 or higher

[jimbethancourt]

Upgrade the following, found by dependency-check:

• commons-io-2.11.0.jar: CVE-2024-47554
• org.eclipse.jgit-6.7.0.202309050840-r.jar: CVE-2023-4759
• xz-1.9.jar: CVE-2022-1271