initial

Author: matthewphamilton

.Rbuildignore

@@ -20,3 +20,13 @@
 ^initial_setup\.R$
 ^doc$
 ^Meta$
+^.*\.Rproj$
+^\.Rproj\.user$
+^data-raw/fns/add\.R$
+^data-raw/fns/import\.R$
+^data-raw/fns/make\.R$
+^data-raw/fns/plot\.R$
+^data-raw/fns/predict\.R$
+^data-raw/fns/transform\.R$
+^data-raw/fns/update\.R$
+^data-raw/fns/write\.R$

DESCRIPTION

@@ -12,7 +12,7 @@ Description: Tools for developing simple microsimulations of mental health
     part of the process of testing and documenting the library.  If you
     have any questions, please contact the authors
     (matthew.hamilton1@monash.edu).
-License: GPL-3 + file LICENSE
+License: GPL-3
 URL: https://ready4-dev.github.io/mimic/,
     https://github.com/ready4-dev/mimic,
     https://ready4-dev.github.io/mimic/
@@ -22,6 +22,7 @@ RoxygenNote: 7.3.2
 Suggests: 
     knitr,
     knitrBootstrap,
+    pkgload,
     rmarkdown,
     testthat
 VignetteBuilder: knitr

NAMESPACE

@@ -3,11 +3,279 @@
 export("%>%")
 export(":=")
 export(.data)
+export(add_activity)
+export(add_age_to_project_dss)
+export(add_cost_calculations)
+export(add_cost_effectiveness_stats)
+export(add_costs_event)
+export(add_enter_model_event)
+export(add_imputed_data)
+export(add_joiners_outcomes_ds)
+export(add_k10_event)
+export(add_k10_scores)
+export(add_leave_model_event)
+export(add_minutes)
+export(add_minutes_event)
+export(add_model_tests)
+export(add_outcome_change_schedule)
+export(add_outcomes_event_sequence)
+export(add_project_assessments)
+export(add_project_model_data)
+export(add_project_outcomes_data)
+export(add_project_treatment_change)
+export(add_qalys_sensitivities)
+export(add_regressions)
+export(add_simulated_data)
+export(add_simulated_treatments)
+export(add_time_to_event)
+export(add_treatment_event)
+export(add_treatment_status)
+export(add_utility_event)
 export(deprecated)
-export(get_this_from_that)
+export(get_pooled)
+export(get_project_model_data)
+export(get_regression)
+export(get_unit_cost_detail)
+export(import_project_data)
+export(make_class_tfmns)
+export(make_composite_results)
+export(make_confusion_ls)
+export(make_draws_tb)
+export(make_economic_summary)
+export(make_enhanced_pool)
+export(make_experts_tb)
+export(make_k10_severity_cuts)
+export(make_outcomes_vars)
+export(make_parsnip_mdl)
+export(make_pooled_fit)
+export(make_predd_observed_ds)
+export(make_project_activity_ds)
+export(make_project_aqol6d_mdls)
+export(make_project_chu9d_mdls)
+export(make_project_consolidated_ds)
+export(make_project_contacts_ds)
+export(make_project_cost_mdlng_ds)
+export(make_project_costs_ds)
+export(make_project_demographics_ds)
+export(make_project_dictionary)
+export(make_project_ds)
+export(make_project_joiners_ds)
+export(make_project_k10_mdls)
+export(make_project_keys)
+export(make_project_metrics)
+export(make_project_minutes_cmprsn)
+export(make_project_minutes_mdls)
+export(make_project_notes_ds)
+export(make_project_outcomes_ds)
+export(make_project_overview_ds)
+export(make_project_params_tb)
+export(make_project_recode_lup)
+export(make_project_results)
+export(make_project_service_use_ds)
+export(make_project_sim_summary)
+export(make_project_sunk_tb)
+export(make_project_ts_ds)
+export(make_project_tx_mdlng_ds)
+export(make_project_tx_mdls)
+export(make_regression_report)
+export(make_regressions_ls)
+export(make_report_data)
+export(make_results_matrix)
+export(make_results_summary)
+export(make_results_synthesis)
+export(make_simulated_draws)
+export(make_structural_vars)
+export(make_synthetic_data)
+export(make_synthetic_tests)
+export(make_two_part_mdl)
+export(make_tx_mdl_confusion)
+export(make_utility_predictions_ds)
+export(make_weeks_suffix)
+export(plot_pooled)
+export(plot_test_scatter)
+export(plot_tx_mdl_confusion)
+export(predict_comparator_pathway)
+export(predict_digital_pathway)
+export(predict_from_pool)
+export(predict_with_sim)
+export(transform_ds_to_wide)
+export(transform_project_outcomes_ds)
+export(transform_to_long_results)
+export(transform_to_min_and_max)
+export(transform_tx_factor)
+export(transform_tx_mdlng_ds)
+export(update_current_date)
+export(update_current_event)
+export(update_gender)
+export(update_k10_event_schedule)
+export(update_population_classes)
+export(update_predictions_ds)
+export(update_previous)
+export(update_qalys)
+export(update_scheduled_date)
+export(update_tx_start_end)
+export(update_with_imputed)
+export(write_project_RDS)
+export(write_project_csvs)
+export(write_project_ws)
 import(methods)
+importFrom(BCEA,bcea)
+importFrom(Hmisc,capitalize)
+importFrom(SHELF,fitdist)
+importFrom(SHELF,plinearpool)
+importFrom(SHELF,plotfit)
+importFrom(SHELF,qlinearpool)
+importFrom(SHELF,rlinearpool)
+importFrom(assertthat,assert_that)
+importFrom(betareg,betareg)
+importFrom(broom,tidy)
+importFrom(caret,confusionMatrix)
+importFrom(didgformula,sim)
+importFrom(dplyr,across)
+importFrom(dplyr,all_of)
+importFrom(dplyr,arrange)
+importFrom(dplyr,as_tibble)
+importFrom(dplyr,bind_cols)
+importFrom(dplyr,bind_rows)
+importFrom(dplyr,c_across)
+importFrom(dplyr,case_when)
+importFrom(dplyr,cross_join)
+importFrom(dplyr,desc)
+importFrom(dplyr,distinct)
+importFrom(dplyr,ends_with)
+importFrom(dplyr,everything)
+importFrom(dplyr,filter)
+importFrom(dplyr,first)
+importFrom(dplyr,full_join)
+importFrom(dplyr,group_by)
+importFrom(dplyr,inner_join)
+importFrom(dplyr,lag)
+importFrom(dplyr,last)
+importFrom(dplyr,left_join)
+importFrom(dplyr,mutate)
+importFrom(dplyr,n)
+importFrom(dplyr,nth)
+importFrom(dplyr,pull)
+importFrom(dplyr,reframe)
+importFrom(dplyr,rename)
+importFrom(dplyr,rename_with)
+importFrom(dplyr,right_join)
+importFrom(dplyr,row_number)
+importFrom(dplyr,rowwise)
+importFrom(dplyr,select)
+importFrom(dplyr,slice)
+importFrom(dplyr,starts_with)
+importFrom(dplyr,summarise)
+importFrom(dplyr,summarise_at)
+importFrom(dplyr,ungroup)
+importFrom(dplyr,where)
+importFrom(ggplot2,autoplot)
+importFrom(ggplot2,scale_fill_gradient)
+importFrom(janitor,row_to_names)
 importFrom(lifecycle,deprecated)
+importFrom(lubridate,NA_Date_)
+importFrom(lubridate,as.period)
+importFrom(lubridate,days)
+importFrom(lubridate,interval)
+importFrom(lubridate,time_length)
+importFrom(lubridate,weeks)
+importFrom(lubridate,years)
+importFrom(lubridate,ymd)
 importFrom(magrittr,"%>%")
+importFrom(mice,complete)
+importFrom(mice,mice)
+importFrom(parsnip,fit)
+importFrom(parsnip,multinom_reg)
+importFrom(performance,check_model)
+importFrom(performance,compare_performance)
+importFrom(performance,test_performance)
+importFrom(purrr,assign_in)
+importFrom(purrr,discard)
+importFrom(purrr,flatten_chr)
+importFrom(purrr,keep_at)
+importFrom(purrr,map)
+importFrom(purrr,map2)
+importFrom(purrr,map2_chr)
+importFrom(purrr,map2_dbl)
+importFrom(purrr,map2_dfr)
+importFrom(purrr,map2_int)
+importFrom(purrr,map2_vec)
+importFrom(purrr,map_chr)
+importFrom(purrr,map_dbl)
+importFrom(purrr,map_dfc)
+importFrom(purrr,map_dfr)
+importFrom(purrr,map_int)
+importFrom(purrr,map_lgl)
+importFrom(purrr,map_vec)
 importFrom(purrr,pluck)
+importFrom(purrr,reduce)
+importFrom(purrr,walk)
+importFrom(purrr,walk2)
+importFrom(readxl,read_xlsx)
+importFrom(ready4,get_from_lup_obj)
+importFrom(ready4,procureSlot)
+importFrom(ready4show,manufacture.ready4show_correspondences)
+importFrom(ready4show,ready4show_correspondences)
+importFrom(ready4show,renew.ready4show_correspondences)
+importFrom(ready4use,Ready4useDyad)
+importFrom(ready4use,add_dictionary)
+importFrom(ready4use,ready4use_dictionary)
+importFrom(ready4use,renew.ready4use_dictionary)
 importFrom(rlang,":=")
 importFrom(rlang,.data)
+importFrom(rlang,exec)
+importFrom(rlang,sym)
+importFrom(scales,dollar)
+importFrom(scorz,add_adol_chu9d)
+importFrom(serious,add_cumulatives)
+importFrom(serious,add_episodes)
+importFrom(serious,add_new_uid)
+importFrom(serious,add_temporal_vars)
+importFrom(serious,add_tenure)
+importFrom(serious,make_service_summary)
+importFrom(serious,make_summary_ds)
+importFrom(serious,make_temporal_vars)
+importFrom(serious,transform_data_fmt)
+importFrom(serious,transform_to_temporal)
+importFrom(serious,update_for_price_year)
+importFrom(specific,calculate_depnt_var_tfmn)
+importFrom(stats,predict)
+importFrom(stats,setNames)
+importFrom(stringr,str_detect)
+importFrom(stringr,str_extract_all)
+importFrom(stringr,str_remove)
+importFrom(stringr,str_remove_all)
+importFrom(stringr,str_replace)
+importFrom(stringr,str_replace_all)
+importFrom(stringr,str_squish)
+importFrom(stringr,str_sub)
+importFrom(synthpop,compare)
+importFrom(synthpop,syn)
+importFrom(tibble,add_case)
+importFrom(tibble,as_tibble)
+importFrom(tibble,rownames_to_column)
+importFrom(tibble,tibble)
+importFrom(tibble,tribble)
+importFrom(tidyr,all_of)
+importFrom(tidyr,any_of)
+importFrom(tidyr,fill)
+importFrom(tidyr,pivot_longer)
+importFrom(tidyr,pivot_wider)
+importFrom(tidyselect,all_of)
+importFrom(tidyselect,any_of)
+importFrom(tsibble,fill_gaps)
+importFrom(tune,coord_obs_pred)
+importFrom(yardstick,conf_mat)
+importFrom(youthu,add_change_in_ds_var)
+importFrom(youthu,add_qalys_to_ds)
+importFrom(youthu,add_utl_predn)
+importFrom(youthu,get_mdl_metadata)
+importFrom(youthu,get_mdls_lup)
+importFrom(youthu,get_ttu_dv_dss)
+importFrom(youthu,make_predn_metadata_ls)
+importFrom(youthvars,YouthvarsProfile)
+importFrom(youthvars,youthvars_aqol6d_adol)
+importFrom(youthvars,youthvars_chu9d_adolaus)
+importFrom(youthvars,youthvars_gad7)
+importFrom(youthvars,youthvars_k10_aus)
+importFrom(youthvars,youthvars_phq9)