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README.Rmd
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README.Rmd
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---
output: github_document
---
<!-- README.md is generated from README.Rmd. Please edit that file -->
```{r, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "man/figures/",
out.width = "100%"
)
```
## :mortar_board: Practice 1 - Research Compendium
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[](https://choosealicense.com/licenses/gpl-2.0/)
[](https://github.com/rdatatoolbox/practice1/actions/workflows/pkgdown.yaml)
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Structure of the research compendium of the [practice 1](https://rdatatoolbox.github.io/ex-compendium.html) of the training course
[**Reproducible Research in Computational Ecology**](https://rdatatoolbox.github.io).
### Content
This repository is structured as follow:
- [`data/`](https://github.com/rdatatoolbox/practice1/tree/main/data):
contains all raw data required to perform analyses
- [`analyses/`](https://github.com/rdatatoolbox/practice1/tree/main/analyses/):
contains R scripts to run each step of the workflow
- [`R/`](https://github.com/rdatatoolbox/practice1/tree/main/R):
contains R functions developed especially for this project
- [`DESCRIPTION`](https://github.com/rdatatoolbox/practice1/tree/main/DESCRIPTION):
contains project metadata (author, date, dependencies, etc.)
- [`make.R`](https://github.com/rdatatoolbox/practice1/tree/main/make.R):
main R script to run the entire project by calling each R script stored in the `analyses/` folder
### Usage
Fork and clone the repository, open R/RStudio and run:
```{r eval=FALSE}
source("make.R")
```
### Notes
- All required packages, listed in the `DESCRIPTION` file, will be installed (if necessary)
- All required packages and R functions will be loaded
### How to cite
> Casajus N, Bonnici I, Dray S, Gimenez O, Guéry L, Guilhaumon F, Schiettekatte NMD & Siberchicot A (2023) Workshop FRB-CESAB & RT EcoStat: Reproducible Research in Computational Ecology. Zenodo. <http://doi.org/10.5281/zenodo.4262978>.