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@STokajian-Microbial-Genomics-Lab

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raysas/readme.md

i like coding and biology. i also like math :)

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Im a Computational Biology student at Université Paris-Saclay, France.
I have a B.Sc. in Bioinformatics from Lebanese American University, Lebanon.

  • Trying to learn nextflow and julia
  • Attempting to build computational packages, models & pipelines for biological data (NGS mainly)
  • I like learning new things and taking notes

Computational topics:
network science, statistical/machine learning, deep learning, graph convolutions, mathematical modelling, dynamical systems

Bioinformatics interests:
systems bioloy, omics data integration, gene regulatory network inference, single-cell and spatial transcriptomics, epigenomics and neurogenomics

Technical:
Python packaging, Bash pipelines, R data analysis

Python R LaTeX Bash Conda Jupyter Git

PyTorch Ubuntu TensorFlow Linux BioPython Scikit-Learn SymPy NumPy Pandas Tidyverse Plotly

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  1. RNAr-structural-library RNAr-structural-library Public

    Forked from rna-oop/2425-m1-geniomhe-group-6

    python library allowing easy manipulation, reading, writing and transforming RNA structures to study

    Jupyter Notebook

  2. neural-nets-library neural-nets-library Public

    Forked from deeplearning-oop/2425-m1geniomhe-group-1

    ANN python library implementation from scratch using object-oriented programming principles

    Python 1

  3. simple-HMM-toy simple-HMM-toy Public

    Hidden Markov Model implemented from scratch for the 5′ splice-site recognition problem

    Python

  4. modelling-project modelling-project Public

    agent-based tumor growth and immune interaction model implementation and simulation analysis

    NetLogo

  5. data-mining-gene-expression data-mining-gene-expression Public

    Data Mining project (Fall2023) involving the classification and clustering of Sars-Cov-2 gene expression RNA-seq data

    R

  6. GLM-from-scratch GLM-from-scratch Public

    a generalized linear models python library implementation from scratch

    R