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Rat Genome Database

5 followers
rgd.web@mcw.edu

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rgd-core-library rgd-core-library Public

Domain layer and shared components

Java
rgd-web-application rgd-web-application Public

Code used by the RGD web site and tools

JavaScript 2
rgd-web-services rgd-web-services Public

Swagger implementation

Java
rgd-annotation-files rgd-annotation-files Public

GO annotation files in GAF, GPAD and GPI format

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Showing 10 of 151 repositories

rgd-annotation-files Public
GO annotation files in GAF, GPAD and GPI format

rat-genome-database/rgd-annotation-files’s past year of commit activity

0 GPL-3.0 0 1 0 Updated Nov 29, 2025
rgd-core-library Public
Domain layer and shared components

rat-genome-database/rgd-core-library’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Nov 25, 2025
clinvar-pipeline Public
Loads variants from ClinVar into RGD database. Creates disease annotations to variants and also for genes, based on orthology.

rat-genome-database/clinvar-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Nov 25, 2025
rgd-web-application Public
Code used by the RGD web site and tools

rat-genome-database/rgd-web-application’s past year of commit activity

JavaScript 2 GPL-3.0 0 0 2 Updated Nov 25, 2025
imex-interactions-pipeline Public
Load protein interactions from IMEX database.

rat-genome-database/imex-interactions-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Nov 24, 2025
update-terms-in-full-annot-pipeline Public
Internal QC pipeline for FULL_ANNOT table: updates term names and aspects.

rat-genome-database/update-terms-in-full-annot-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Nov 24, 2025
gwas-annotation-pipeline Public
create QTL and variant annotations on the importet GWAS data

rat-genome-database/gwas-annotation-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Nov 24, 2025
solrUpdater Public
Updates the solor index for ontomate from the database

rat-genome-database/solrUpdater’s past year of commit activity

HTML 0 GPL-3.0 0 0 0 Updated Nov 21, 2025
expression-tpm-pipeline Public
load the TPM data being generated for GEO expression samples

rat-genome-database/expression-tpm-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Nov 21, 2025
object-mapper-pipeline Public
Calculates/Updates assembly map positions for strains, qtls and markers.

rat-genome-database/object-mapper-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Nov 19, 2025

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