[DATALAD RUNCMD] run codespell throughout fixing typos automagically

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "codespell -w",
 "exit": 0,
 "extra_inputs": [],
 "inputs": [],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Author: yarikoptic

apps/vscode-editor/src/sync.ts

@@ -172,7 +172,7 @@ export async function syncEditorToHost(
         // apply initial theme
         applyDisplayPrefs();
 
-        // init editor contents and sync cannonical version back to text editor
+        // init editor contents and sync canonical version back to text editor
         const result = await editor.setMarkdown(markdown, writerOptions(), false);
         if (result) {
 

apps/vscode/CHANGELOG.md

@@ -42,7 +42,7 @@
 - Enable snippet suggestions in qmd mode
 - Visual Editor: Preserve shortcodes in link targets
 - Correct config value for disabling word based suggestions
-- Embedded syntax hightlighting and cell execution for Stata
+- Embedded syntax highlighting and cell execution for Stata
 
 ## 1.109.0 (Release on 2023-12-07)
 
@@ -283,7 +283,7 @@
 - Exclude parens from cite/crossref highlighting in visual editor
 - Correct hover/preview behavior for display math in lists
 - Syntax highlighting for `plantuml` code blocks
-- Remove custom paste hadling for links (too many unwanted side effects)
+- Remove custom paste handling for links (too many unwanted side effects)
 - Only update Quarto Assist panel for Quarto docs
 - Visual mode select all in codeblock now targets just the code block
 - Correctly advance selection for line-by-line execution in visual mode
@@ -530,7 +530,7 @@
 - Respect `eval: false` for cell execution commands
 - LaTeX equation preview: include \newcommand (and similar) definitions in preview
 - Correct package.json configuration for quick suggestions
-- Outline view: protect against unparseable YAML in title block
+- Outline view: protect against unparsable YAML in title block
 
 ## 1.44.0 (Release on 2022-10-03)
 

apps/vscode/languages/dot/snippets/dot.json

@@ -63,7 +63,7 @@
     "{ rank=same|min|max; x; y }": {
         "prefix": "rank",
         "body": [
-            "{ rank=${1|same,min,max,# max is bottom|}; ${2:space delimitted list }};"
+            "{ rank=${1|same,min,max,# max is bottom|}; ${2:space delimited list }};"
         ],
         "description": "{rank=same|min|max; x; y}"
     },

apps/vscode/src/host/hooks.ts

@@ -45,7 +45,7 @@ export function hasHooks() {
 
 export function hooksExtensionHost() : ExtensionHost {
   return {
-    // supported executable languages (we delegate to the default for langugaes
+    // supported executable languages (we delegate to the default for languages
     // w/o runtimes so we support all languages)
     executableLanguages,
 

apps/vscode/src/lsp/client.ts

@@ -180,7 +180,7 @@ function embeddedCodeCompletionProvider(engine: MarkdownEngine) {
     const vdoc = await virtualDoc(document, position, engine);
 
     if (vdoc && !isWithinYamlComment(document, position)) {
-      // if there is a trigger character make sure the langauge supports it
+      // if there is a trigger character make sure the language supports it
       const language = vdoc.language;
       if (context.triggerCharacter) {
         if (

apps/vscode/src/providers/cell/commands.ts

@@ -292,7 +292,7 @@ class RunCurrentCommand extends RunCommand implements Command {
         // submit
         const executed = await executeSelectionInteractive(executor);
 
-        // if the executor isn't capable of lenguage aware runSelection
+        // if the executor isn't capable of language aware runSelection
         // then determine the selection manually
         if (!executed) {
           // if the selection is empty take the whole line, otherwise
@@ -515,7 +515,7 @@ class RunCellsBelowCommand extends RunCommand implements Command {
     for (const blk of tokens.filter((token?: Token) => blockIsExecutable(this.host_, token)) as Array<TokenMath | TokenCodeBlock>) {
       // skip if the cell is above or at the cursor
       if (line < blk.range.start.line) {
-        // set langauge if needed
+        // set language if needed
         const blockLanguage = languageNameFromBlock(blk);
         if (!language) {
           language = blockLanguage;

apps/vscode/src/providers/create/directory.ts

@@ -25,7 +25,7 @@ export async function resolveDirectoryForCreate(
   subdirTitle: string,
   forceSubdirPrompt: boolean
 ) {
-  // select direcotry (see if we have a default parent)
+  // select directory (see if we have a default parent)
   const kDefaultParentDir = `quarto.create${name}.dir`;
   const defaultParent = context.globalState.get<string | undefined>(
     kDefaultParentDir,

apps/vscode/src/providers/diagram/diagram-webview.ts

@@ -91,7 +91,7 @@ export class QuartoDiagramWebviewManager extends QuartoWebviewManager<
   private async updatePreview(state?: DiagramState) {
 
     if (this.isVisible()) {
-      // see if there is an explcit state update (otherwise inspect hte active editor)
+      // see if there is an explicit state update (otherwise inspect the active editor)
       if (state) {
 
         this.updateViewState(state);

apps/vscode/src/providers/diagram/diagram.ts

@@ -32,7 +32,7 @@ export function activateDiagram(
   host: ExtensionHost,
   engine: MarkdownEngine
 ): Command[] {
-  // initiaize manager
+  // initialize manager
   const diagramManager = new QuartoDiagramWebviewManager(context, host, engine);
 
   // code lens

apps/vscode/src/providers/editor/sync.ts

@@ -66,8 +66,8 @@ export function editorSyncManager(
 ) : EditorSyncManager {
 
   // state: an update from the visual editor that we have yet to apply. we don't 
-  // apply these on every keystoke b/c they are expensive. we poll to apply these
-  // udpates periodically and also apply them immediately on save and when the 
+  // apply these on every keystroke b/c they are expensive. we poll to apply these
+  // updates periodically and also apply them immediately on save and when the 
   // visual editor instructs us to do so (e.g. when it loses focus)
   let pendingVisualEdit: unknown | undefined;
 
@@ -76,7 +76,7 @@ export function editorSyncManager(
   let supressNextUpdate = false; 
 
   // collect a pending edit, converting it to markdown and setting the supressNextUpdate bit
-  // if we fail get the markdown then we neither clear the pending edit nor supress the update
+  // if we fail get the markdown then we neither clear the pending edit nor suppress the update
   const collectPendingVisualEdit = async () : Promise<string | undefined> => {
     if (pendingVisualEdit) {
       const state = pendingVisualEdit;
@@ -135,7 +135,7 @@ export function editorSyncManager(
       }
     },
 
-    // notification that the visual editor changed (enque the change)
+    // notification that the visual editor changed (enqueue the change)
     onVisualEditorChanged: async (state: unknown) => {
       pendingVisualEdit = state;
     },
@@ -144,7 +144,7 @@ export function editorSyncManager(
     flushPendingUpdates: collectAndApplyPendingVisualEdit,
 
     // notification that the document changed, let the visual editor
-    // know about the change unless the next update is supressed. note that
+    // know about the change unless the next update is suppressed. note that
     // the visual editor will throttle these changes internally (and
     // apply them immediately when it receives focus)
     onDocumentChanged: async () => {
@@ -155,7 +155,7 @@ export function editorSyncManager(
       }
     },
 
-    // notification that we are saving (allow flusing of visual editor changes)
+    // notification that we are saving (allow flushing of visual editor changes)
     onDocumentSaving: async () : Promise<TextEdit[]> => {
       // attempt to collect pending edit
       const markdown = await collectPendingVisualEdit();

apps/vscode/src/providers/option.ts

@@ -52,7 +52,7 @@ export function activateOptionEnterProvider(
               );
               if (block) {
                 const language = languageNameFromBlock(block);
-                // handle option enter for the this langauge if we can
+                // handle option enter for the this language if we can
                 const optionComment = languageOptionComment(language);
                 if (optionComment) {
                   handleOptionEnter(window.activeTextEditor, optionComment);
@@ -89,14 +89,14 @@ function handleOptionEnter(editor: TextEditor, comment: string) {
   }
 }
 
-function languageOptionComment(langauge: string) {
+function languageOptionComment(language: string) {
   // some mappings
-  if (langauge === "ojs") {
-    langauge = "js";
+  if (language === "ojs") {
+    language = "js";
   }
 
-  if (Object.keys(kLangCommentChars).includes(langauge)) {
-    return kLangCommentChars[langauge];
+  if (Object.keys(kLangCommentChars).includes(language)) {
+    return kLangCommentChars[language];
   } else {
     return undefined;
   }

apps/vscode/src/providers/preview/preview-errors.ts

@@ -73,7 +73,7 @@ export function jupyterErrorLocation(
     /An error occurred while executing the following cell:\s+(-{3,})\s+([\S\s]+?)\r?\n(\1)[\S\s]+line (\d+)\)/;
   const jupyterMatch = output.match(jupyterPattern);
   if (jupyterMatch) {
-    // read target file and searh for the match (normalized)
+    // read target file and search for the match (normalized)
     if (fs.statSync(previewTarget).isFile()) {
       const cellSrc = jupyterMatch[2];
       const previewSrc = normalizeNewlines(

apps/vscode/src/providers/preview/preview.ts

@@ -533,7 +533,7 @@ class PreviewManager {
         );
         if (browseMatch) {
           // earlier versions of quarto serve didn't print out vscode urls
-          // correctly so we compenstate for that here
+          // correctly so we compensate for that here
           if (isQuartoShinyDoc(this.engine_, this.previewDoc_)) {
             this.previewUrl_ = vsCodeWebUrl(browseMatch[2]);
           } else {

apps/vscode/src/vdoc/languages.ts

@@ -28,17 +28,17 @@ export interface EmbeddedLanguage {
   canFormatDocument?: boolean;
 }
 
-export function embeddedLanguage(langauge: string) {
-  langauge = langauge.split("-").pop() || "";
-  return kEmbededLanguages.find((lang) => lang.ids.includes(langauge));
+export function embeddedLanguage(language: string) {
+  language = language.split("-").pop() || "";
+  return kEmbededLanguages.find((lang) => lang.ids.includes(language));
 }
 
 export function languageCanFormatDocument(language: EmbeddedLanguage) {
   return language.canFormatDocument !== false; 
 }
 
 const kEmbededLanguages = [
-  // these langauges required creating a temp file
+  // these languages required creating a temp file
   defineLanguage("python", {
     inject: ["# type: ignore", "# flake8: noqa"],
     emptyLine: "#",
@@ -77,7 +77,7 @@ const kEmbededLanguages = [
   defineLanguage("java"),
   defineLanguage("cpp"),
   defineLanguage("go"),
-  // these langauges work w/ text document content provider
+  // these languages work w/ text document content provider
   defineLanguage("html", { type: "content" }),
   defineLanguage("css", { type: "content" }),
   defineLanguage("javascript", { type: "content" }),
@@ -98,7 +98,7 @@ function defineLanguage(
   options?: LanguageOptions
 ): EmbeddedLanguage {
 
-  // lookup langauge
+  // lookup language
   const language = editorLanguage(id);
   if (!language) {
     throw new Error(`Unknown language ${id}`);

apps/vscode/src/vdoc/vdoc-tempfile.ts

@@ -94,8 +94,8 @@ export async function deactivateVirtualDocTempFiles() {
   });
 }
 
-export function isLanguageVirtualDoc(langauge: EmbeddedLanguage, uri: Uri) {
-  return languageVirtualDocs.get(langauge.extension)?.uri.toString() === uri.toString();
+export function isLanguageVirtualDoc(language: EmbeddedLanguage, uri: Uri) {
+  return languageVirtualDocs.get(language.extension)?.uri.toString() === uri.toString();
 }
 
 // delete a document

apps/writer-server/src/index.ts

@@ -24,7 +24,7 @@ import { createServer } from './server';
 const development = process.env.NODE_ENV !== 'production';
 
 // resource dirs
-// TODO: we currnetly don't copy resources from quarto-core
+// TODO: we currently don't copy resources from quarto-core
 const cwd = process.cwd();
 const editorDevResourcesDir = path.normalize(path.join(cwd, "../../packages/editor-server/src/resources"));
 const editorResourcesDir = development ? editorDevResourcesDir : editorDevResourcesDir;

apps/writer/public/content/MANUAL-FULL.md

@@ -949,7 +949,7 @@ header when requesting a document from a URL:
 `--no-check-certificate`
 
 :   Disable the certificate verification to allow access to
-    unsecure HTTP resources (for example when the certificate
+    insecure HTTP resources (for example when the certificate
     is no longer valid or self signed).
 
 ## Options affecting specific writers {.options}