Skip to content

Redbiom help update #2382

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 6 commits into from
Oct 31, 2017
Merged

Redbiom help update #2382

Changes from all commits
Commits
Show all changes
6 commits
Select commit Hold shift + click to select a range
5de1b5e
Update redbiom.html
adswafford Oct 27, 2017
c9bf203
Update redbiom.html
adswafford Oct 30, 2017
d1e198e
Update redbiom.html
adswafford Oct 30, 2017
4b3f057
Merge branch 'redbiom-help-update' of https://github.com/biocore/qiit…
antgonza Oct 31, 2017
6630cc9
fixing smal details and adding emp_release1
antgonza Oct 31, 2017
ca7810e
fixing
antgonza Oct 31, 2017
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
32 changes: 27 additions & 5 deletions qiita_pet/templates/redbiom.html
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -208,18 +208,40 @@
<ul>
<li>
Find all samples in which the word infant exists, as well as antibiotics,
where the infants are under a certain number of days old:
"infant &amp; antibiotics where age_days < 30"
where the infants are under a year old:
<ul>
<li>
<i>infant &amp; antibiotics where age_years <= 1</i>
</li>
</ul>
</li>
<li>
Find all samples only beloging to the EMP in which the ph in under 7:
"where ph < 7 &amp; emp_release1 == True"
Find all samples only belonging to the EMP in which the ph is under 7 for a variety of sample types:
<ul>
<li>soil: <i>soil where ph < 7 and emp_release1 == 'True'</i></li>
<li>ocean water: <i>water &amp; ocean where ph > 7 and emp_release1 == 'True'</i></li>
<li>non-ocean water: <i>water - ocean where ph > 7 and emp_release1 == 'True'</i></li>
</ul>
<li>Or instead of ph you could search for a different metadata category:</li>
<ul>
<li><i>water &amp; ocean where salinity > 20</i></li>
</ul>
</li>
<li>Some other interesting examples:
<ul>
<li><i>feces &amp; canine</i></li>
<li><i>(beer | cider | wine | alcohol)</i></li>
<li><i>where sample_type == 'stool'</i></li>
<li><i>usa where sample_type == 'stool' and host_taxid == 9606</i></li>
</ul>
</li>
</li>
</li>
</ul>
</li>
<li>
<b>Feature</b>:<br/>
The seach will be on all the features, in specific: OTU ids for close reference and exact sequences for deblur.
The search will be on all the features, in specific: OTU ids for close reference and exact sequences for deblur.
<br/><br/>
Examples:
<br/>
Expand Down