Qiita should be fully functional and the developers are feeling great with the code that we have. At this stage, minimal API changes should be done. A detailed description of the goals:

1. Easy deployment
2. Sphinx documentation
3. Support other tools/datatypes
   i. Metabolomics
   ii. WGS
   iii. Single Strain WGS
4. Revisit all db objects, with special attention to:
   i. Job
   ii. Analysis
   iii. Collection and Investigation objects
   iv. Reference object - should include the already indexed DB.
5. Refactor job submission
6. Refactor all handlers. Testing handlers is tricky. The best way to do this will be to move all code out from the handlers, into a qiita_pet module (or qiita_ware if needed) and the handlers only parse the arguments and call this new API.
7. Improve testing framework and raise coverage (with good testing) to at least 97%.
   i. This should also include user usability testing.
8. UI for adding new references and parameters set
9. Stable API