@@ -277,6 +277,7 @@ def test_hdf5IO_open(self):
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('Diesel Rhizo' , 3 ),
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('Diesel Root' , 3 ),
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('Diesel bulk' , 3 )],
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+ 'dna_extracted' : [('True' , 27 )],
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'ebi_study_accession' : [('None' , 27 )],
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'ebi_submission_accession' : [('None' , 27 )],
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'elevation' : [('114.0' , 27 )],
@@ -288,8 +289,6 @@ def test_hdf5IO_open(self):
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'experiment_design_description' : [('micro biome of soil and rhizosphere '
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'of cannabis plants from CA' , 27 )],
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'experiment_title' : [('Cannabis Soil Microbiome' , 27 )],
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- 'has_extracted_data' : [('True' , 27 )],
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- 'has_physical_specimen' : [('True' , 27 )],
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'host_subject_id' : [('1001:B1' , 1 ),
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('1001:B2' , 1 ),
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('1001:B3' , 1 ),
@@ -397,7 +396,8 @@ def test_hdf5IO_open(self):
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('96.0693176066' , 1 )],
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'pcr_primers' : [('FWD:GTGCCAGCMGCCGCGGTAA; REV:GGACTACHVGGGTWTCTAAT' , 27 )],
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'ph' : [('6.8' , 9 ), ('6.82' , 10 ), ('6.94' , 8 )],
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- 'physical_location' : [('ANL' , 27 )],
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+ 'physical_specimen_location' : [('ANL' , 27 )],
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+ 'physical_specimen_remaining' : [('True' , 27 )],
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'platform' : [('Illumina' , 27 )],
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'required_sample_info_status' : [('completed' , 27 )],
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'run_center' : [('ANL' , 27 )],
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