STY/ENH: Correct only the appropriate

Author: ElDeveloper

qiita_core/configuration_manager.py

@@ -6,12 +6,13 @@
 # The full license is in the file LICENSE, distributed with this software.
 # -----------------------------------------------------------------------------
 
-from .exceptions import MissingConfigSection
-
 from functools import partial
 from os.path import join, dirname, abspath, isdir
 from os import environ
 from future import standard_library
+
+from .exceptions import MissingConfigSection
+
 with standard_library.hooks():
     from configparser import ConfigParser
 

qiita_core/util.py

@@ -5,12 +5,13 @@
 #
 # The full license is in the file LICENSE, distributed with this software.
 # -----------------------------------------------------------------------------
+from smtplib import SMTP, SMTP_SSL, SMTPException
+from future import standard_library
+
 from qiita_core.qiita_settings import qiita_config
 from qiita_db.sql_connection import SQLConnectionHandler
 from qiita_db.environment_manager import reset_test_database
 
-from smtplib import SMTP, SMTP_SSL, SMTPException
-from future import standard_library
 with standard_library.hooks():
     from email.mime.multipart import MIMEMultipart
     from email.mime.text import MIMEText

qiita_db/commands.py

@@ -6,6 +6,15 @@
 # The full license is in the file LICENSE, distributed with this software.
 # -----------------------------------------------------------------------------
 
+from dateutil.parser import parse
+from os import listdir, remove
+from os.path import join, exists
+from functools import partial
+from future import standard_library
+from future.utils import viewitems
+from collections import defaultdict
+from shutil import move
+
 from .study import Study, StudyPerson
 from .user import User
 from .util import (get_filetypes, get_filepath_types, compute_checksum,
@@ -17,14 +26,6 @@
                          ProcessedSortmernaParams)
 from .sql_connection import SQLConnectionHandler
 
-from dateutil.parser import parse
-from os import listdir, remove
-from os.path import join, exists
-from functools import partial
-from future import standard_library
-from future.utils import viewitems
-from collections import defaultdict
-from shutil import move
 with standard_library.hooks():
     from configparser import ConfigParser
 

qiita_db/environment_manager.py

@@ -6,12 +6,6 @@
 # The full license is in the file LICENSE, distributed with this software.
 # -----------------------------------------------------------------------------
 
-from qiita_core.exceptions import QiitaEnvironmentError
-from qiita_core.qiita_settings import qiita_config
-from .sql_connection import SQLConnectionHandler
-from .reference import Reference
-from natsort import natsorted
-
 from qiita_db.ontology import Ontology
 from qiita_db.util import convert_to_id
 from os.path import abspath, dirname, join, exists, basename, splitext
@@ -22,6 +16,13 @@
 
 from future import standard_library
 from future.utils import viewitems
+
+from qiita_core.exceptions import QiitaEnvironmentError
+from qiita_core.qiita_settings import qiita_config
+from .sql_connection import SQLConnectionHandler
+from .reference import Reference
+from natsort import natsorted
+
 with standard_library.hooks():
     from urllib.request import urlretrieve
 

qiita_db/test/test_commands.py

@@ -6,6 +6,15 @@
 # The full license is in the file LICENSE, distributed with this software.
 # -----------------------------------------------------------------------------
 
+from os import remove, close, mkdir
+from os.path import exists, join, basename
+from tempfile import mkstemp, mkdtemp
+from shutil import rmtree
+from unittest import TestCase, main
+from future.utils.six import StringIO
+from future import standard_library
+from functools import partial
+
 from qiita_db.commands import (load_study_from_cmd, load_raw_data_cmd,
                                load_sample_template_from_cmd,
                                load_prep_template_from_cmd,
@@ -22,14 +31,6 @@
 from qiita_core.util import qiita_test_checker
 from qiita_ware.processing_pipeline import generate_demux_file
 
-from os import remove, close, mkdir
-from os.path import exists, join, basename
-from tempfile import mkstemp, mkdtemp
-from shutil import rmtree
-from unittest import TestCase, main
-from future.utils.six import StringIO
-from future import standard_library
-from functools import partial
 with standard_library.hooks():
     import configparser
 

qiita_ware/wrapper.py

@@ -1,7 +1,5 @@
 from __future__ import division
 
-from qiita_db.job import Job
-
 from shutil import rmtree
 from os import remove
 from sys import stderr
@@ -10,6 +8,8 @@
 import networkx as nx
 from moi.job import system_call, submit, ctxs, ctx_default
 
+from qiita_db.job import Job
+
 
 def system_call_from_job(job_id, **kwargs):
     """Executes a system call described by a Job