Merge pull request #123 from squirrelo/initializing-initialize-initially

fix alpha rarefaction naming

Author: adamrp

qiita_db/support_files/initialize.sql

@@ -38,4 +38,4 @@ INSERT INTO qiita.filepath_type (filepath_type) VALUES ('raw_sequences'), ('raw_
 INSERT INTO qiita.checksum_algorithm (name) VALUES ('crc32');
 
 -- Populate commands available
-INSERT INTO qiita.command (name, command) VALUES ('Summarize Taxa', 'summarize_taxa_through_plots.py'), ('Beta Diversity', 'beta_diversity_through_plots.py'), ('Alpha Diversity', 'alpha_rarefaction_through_plots.py');
+INSERT INTO qiita.command (name, command) VALUES ('Summarize Taxa', 'summarize_taxa_through_plots.py'), ('Beta Diversity', 'beta_diversity_through_plots.py'), ('Alpha Rarefaction', 'alpha_rarefaction.py');

qiita_db/test/test_job.py

@@ -53,7 +53,7 @@ def test_exists_not_there(self):
     def test_create(self):
         """Makes sure creation works as expected"""
         # make first job
-        new = Job.create("18S", "Alpha Diversity",
+        new = Job.create("18S", "Alpha Rarefaction",
                          self.options, Analysis(1))
         self.assertEqual(new.id, 4)
         # make sure job inserted correctly

qiita_pet/handlers/analysis_handlers.py

@@ -57,9 +57,9 @@ def post(self):
         data_types = sorted(list(data_types))
 
         # FIXME: Pull out from the database, see #111
-        commands = {'16S': ['Alpha Diversity', 'Beta Diversity',
+        commands = {'16S': ['Alpha Rarefaction', 'Beta Diversity',
                             'Summarize Taxa'],
-                    '18S': ['Alpha Diversity', 'Beta Diversity',
+                    '18S': ['Alpha Rarefaction', 'Beta Diversity',
                             'Summarize Taxa'],
                     'Metabolomic': ['Summarize Taxa']}