-{"metadata":{"kernelspec":{"display_name":"Python 3 (ipykernel)","language":"python","name":"python3"},"language_info":{"name":"python","version":"3.12.8","mimetype":"text/x-python","codemirror_mode":{"name":"ipython","version":3},"pygments_lexer":"ipython3","nbconvert_exporter":"python","file_extension":".py"}},"nbformat_minor":5,"nbformat":4,"cells":[{"id":"377fef56-484d-491c-b19e-1be6931e44eb","cell_type":"code","source":"import pickle","metadata":{"trusted":true},"outputs":[],"execution_count":1},{"id":"92e3921b-2bb8-4333-8cfe-4bd27f785d24","cell_type":"code","source":"from python_workflow_definition.cwl import write_workflow","metadata":{"trusted":true},"outputs":[],"execution_count":2},{"id":"5303c059-8ae4-4557-858e-b4bd64eac711","cell_type":"code","source":"write_workflow(file_name=\"workflow.json\")","metadata":{"trusted":true},"outputs":[],"execution_count":3},{"id":"df302bd2-e9b6-4595-979c-67c46414d986","cell_type":"code","source":"! cwltool workflow.cwl workflow.yml","metadata":{"trusted":true},"outputs":[{"name":"stdout","output_type":"stream","text":"/srv/conda/envs/notebook/bin/cwltool:11: DeprecationWarning: Nesting argument groups is deprecated.\n sys.exit(run())\n\u001b[1;30mINFO\u001b[0m /srv/conda/envs/notebook/bin/cwltool 3.1.20250110105449\n\u001b[1;30mINFO\u001b[0m Resolved 'workflow.cwl' to 'file:///home/jovyan/example_workflows/arithmetic/workflow.cwl'\n\u001b[1;30mINFO\u001b[0m [workflow ] start\n\u001b[1;30mINFO\u001b[0m [workflow ] starting step get_prod_and_div_0\n\u001b[1;30mINFO\u001b[0m [step get_prod_and_div_0] start\n\u001b[1;30mINFO\u001b[0m [job get_prod_and_div_0] /tmp/_1apt559$ python \\\n -m \\\n python_workflow_definition.cwl \\\n --workflowfile=/tmp/dyuxg6ka/stgf337bac5-2f8e-4489-bd51-83491b1d5f0e/workflow.py \\\n --function=workflow.get_prod_and_div \\\n --arg_x=/tmp/dyuxg6ka/stgd87c2fe4-ca8e-4031-9af0-751d6944cbe7/x.pickle \\\n --arg_y=/tmp/dyuxg6ka/stg7bcb8ced-0e5b-442e-a0e0-2b3117afe2d8/y.pickle\n\u001b[1;30mINFO\u001b[0m [job get_prod_and_div_0] completed success\n\u001b[1;30mINFO\u001b[0m [step get_prod_and_div_0] completed success\n\u001b[1;30mINFO\u001b[0m [workflow ] starting step get_sum_1\n\u001b[1;30mINFO\u001b[0m [step get_sum_1] start\n\u001b[1;30mINFO\u001b[0m [job get_sum_1] /tmp/ysau_yra$ python \\\n -m \\\n python_workflow_definition.cwl \\\n --workflowfile=/tmp/rm6c9qek/stgfef68b90-5d69-4da9-a952-b9c2f2a1eb76/workflow.py \\\n --function=workflow.get_sum \\\n --arg_x=/tmp/rm6c9qek/stg35728be7-5a6d-487b-bd02-345581007663/prod.pickle \\\n --arg_y=/tmp/rm6c9qek/stgc0992786-237e-4308-9d9e-814ebbfb0319/div.pickle\n\u001b[1;30mINFO\u001b[0m [job get_sum_1] completed success\n\u001b[1;30mINFO\u001b[0m [step get_sum_1] completed success\n\u001b[1;30mINFO\u001b[0m [workflow ] starting step get_square_2\n\u001b[1;30mINFO\u001b[0m [step get_square_2] start\n\u001b[1;30mINFO\u001b[0m [job get_square_2] /tmp/o3gzya8t$ python \\\n -m \\\n python_workflow_definition.cwl \\\n --workflowfile=/tmp/6a3sltnz/stg58ccf048-a5c3-4ba3-a24f-c64adfff84cd/workflow.py \\\n --function=workflow.get_square \\\n --arg_x=/tmp/6a3sltnz/stg70203cec-cbd4-4fea-a3de-70e9373d9c9d/result.pickle\n\u001b[1;30mINFO\u001b[0m [job get_square_2] completed success\n\u001b[1;30mINFO\u001b[0m [step get_square_2] completed success\n\u001b[1;30mINFO\u001b[0m [workflow ] completed success\n{\n \"result_file\": {\n \"location\": \"file:///home/jovyan/example_workflows/arithmetic/result.pickle\",\n \"basename\": \"result.pickle\",\n \"class\": \"File\",\n \"checksum\": \"sha1$1fd8f217331336b1226b84e351c56fb9a8d93685\",\n \"size\": 21,\n \"path\": \"/home/jovyan/example_workflows/arithmetic/result.pickle\"\n }\n}\u001b[1;30mINFO\u001b[0m Final process status is success\n"}],"execution_count":4},{"id":"2942dbba-ea0a-4d20-be5c-ed9992d09ff8","cell_type":"code","source":"with open(\"result.pickle\", \"rb\") as f:\n print(pickle.load(f))","metadata":{"trusted":true},"outputs":[{"name":"stdout","output_type":"stream","text":"6.25\n"}],"execution_count":5},{"id":"60e909ee-d0d0-4bd1-81c8-dd5274ae5834","cell_type":"code","source":"","metadata":{"trusted":true},"outputs":[],"execution_count":null}]}
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